PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12905.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 257aa    MW: 29586.7 Da    PI: 10.6693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12905.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.2e-052232502355
                              HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              L++llP+       K++ a+iLe A +Y++ Lq
  mrna12905.1-v1.0-hybrid 223 LQKLLPWE-----NKMDTATILESAHRYVRFLQ 250
                              899****7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.127200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-7215255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6218255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-4223254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRIQTQIDDS STHNHDRDPS RTTTLHRSAA PSLPLHFTHS FSARLPRLPP SSATLWDLRS  60
LMPYHLRRRR RYHPVVDIIM YQYRDLRHLV SFHFSAPPRC RRRRTLISHI DLHSILADNT  120
TTQPSLPLSL FADTYCSLAT PKTEPPLYQY GAVSSPNDRP DLLTLDNSPY KRTRLLDSAH  180
QTLEASSAYQ LYPSPPVVAP RGRRLARERR QSGQTLSYKT RCLQKLLPWE NKMDTATILE  240
SAHRYVRFLQ AQVAAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12905.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463010.13e-81PREDICTED: uncharacterized protein LOC105351134
TrEMBLA0A2P6S2I02e-55A0A2P6S2I0_ROSCH; Putative transcription factor bHLH family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.19e-11bHLH family protein