PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12898.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 535aa MW: 59569.7 Da PI: 4.3803

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12898.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.3	1e-25	423	472	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++le +++yF+lpi++AAkeL+v++T+LKr+CR+++I+RWPhRkiksl mrna12898.1-v1.0-hybrid 423 DALELEGIKQYFNLPITKAAKELKVGVTLLKRRCRELNIMRWPHRKIKSL 472 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	406	493	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-22	425	472	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MEYNTQQLVD PEIEENPLEC DYLGYHYQDP LPNSTTSMFE APQIDHGFNS VALPLPEDNN 60 QIPHMGFQGL EDFSLRDYTA LDIANTFSSS PLCDFNNVLD GKTHTTVLES FGESSNDPSD 120 MMIGSSGFSS TQCDSVLFDE KPISTMVDSF DYLINNSTNL GYHAMIESSG FSSSLCDSLV 180 FDDMLLREMV ESLNNNVPSD VGQHEVSMMV ESSRFSSTQC DSVVFDEKPI STMVDSFDYL 240 INNSTNLGHH AMIESSGFSS SLCDSLVFDE MLLREIVESL NNNVPSDVGQ HEVSMMVGSS 300 GFSSTQCDSV VFDEKPISTI VESFGNSSNV PSVFDHHEAS MVTESSAAYS SSHCNALVLY 360 ETPLSTIVDS FDYSDMPTPD LSDEEVSVKI ESGYPSWGTS DTSCLRGTSN RGRCSTQMKI 420 KSDALELEGI KQYFNLPITK AAKELKVGVT LLKRRCRELN IMRWPHRKIK SLNSLIETMK 480 RMGLRNEVKM LEENKRLLEL VPNMELTKRT KRLRQSIFKA NYNKKKMSLS ISLG*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MEYNTQQLVD PEIEENPLEC DYLGYHYQDP LPNSTTSMFE APQIDHGFNS VALPLPEDNN  60
QIPHMGFQGL EDFSLRDYTA LDIANTFSSS PLCDFNNVLD GKTHTTVLES FGESSNDPSD  120
MMIGSSGFSS TQCDSVLFDE KPISTMVDSF DYLINNSTNL GYHAMIESSG FSSSLCDSLV  180
FDDMLLREMV ESLNNNVPSD VGQHEVSMMV ESSRFSSTQC DSVVFDEKPI STMVDSFDYL  240
INNSTNLGHH AMIESSGFSS SLCDSLVFDE MLLREIVESL NNNVPSDVGQ HEVSMMVGSS  300
GFSSTQCDSV VFDEKPISTI VESFGNSSNV PSVFDHHEAS MVTESSAAYS SSHCNALVLY  360
ETPLSTIVDS FDYSDMPTPD LSDEEVSVKI ESGYPSWGTS DTSCLRGTSN RGRCSTQMKI  420
KSDALELEGI KQYFNLPITK AAKELKVGVT LLKRRCRELN IMRWPHRKIK SLNSLIETMK  480
RMGLRNEVKM LEENKRLLEL VPNMELTKRT KRLRQSIFKA NYNKKKMSLS ISLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12898.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309145.1	0.0	PREDICTED: uncharacterized protein LOC101293942 isoform X2
TrEMBL	A0A2P6SNY7	1e-162	A0A2P6SNY7_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004309145.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	mrna12898.1-v1.0-hybrid