PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12818.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 294aa MW: 32234.6 Da PI: 8.4719

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12818.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	34	95	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+st tkfCyynnyslsqPryfCk+C+ryWt GG+lrnvPvGgg+rknk+sss mrna12818.1-v1.0-hybrid 34 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCKRYWTDGGSLRNVPVGGGSRKNKRSSS 95 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	28	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-33	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDTAHWPQGI GVKSMGAEVP DSRPILERRG RPQKDQALNC PRCNSTTTKF CYYNNYSLSQ 60 PRYFCKTCKR YWTDGGSLRN VPVGGGSRKN KRSSSSSPST SNSSKKLAHH DLVMTQQSAD 120 SQNPKIHQGQ DLNLAYPPTS DHEYDHHSIF NPSSSRISTL SPHNLSAMEL LKSTGINASR 180 GLMNSFMAPM SVADSNTITM FSTGNNHGFP NLQEFKPSLS FSLDGYESGY GSLQGVGTSH 240 HHARLLFPTD QDLKQIPSTT TETTTTSTEF EQNRGEGDHS GVYWNGMLGG GSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12818.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307953.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A2P6SP85	1e-179	A0A2P6SP85_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004307953.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	1e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna12818.1-v1.0-hybrid