PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12787.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 281aa    MW: 31596.7 Da    PI: 6.989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12787.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.5e-10291141097
                              HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               lk g   +p   ++++g + +    + l+    g  W+++l+ + +++r++l+kGW+e ++   L++gD+ +F+ +g +++++++
  mrna12787.1-v1.0-hybrid  29 DLKDGKKEIPPAAVRKYGDQIAD--HIFLKVpNCGTHWKIELRTSPRRDRMWLEKGWEELASFYLLDQGDSATFTAEG-EDAHFRI 111
                              566777889********988666..5777774578*******99999999*************************877.6776688 PP

                              EEE CS
                       B3  95 kvf 97 
                              ++f
  mrna12787.1-v1.0-hybrid 112 RIF 114
                              777 PP
2B342.11.5e-131902771498
                              T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               r+ +   fa eh  k  +  +ltl+++ g  +W+v++i     +++ ++++ ++GWk+F ++n L+egD++v+++++  e++++v
  mrna12787.1-v1.0-hybrid 190 TRVFINSAFALEHFCKDGSCCDLTLQNTLGdTTWTVQCISyaisDGRMRTVLSGAGWKSFRQDNLLEEGDVLVLEVIE--ERRCRV 273
                              46899999*****555556779*****6666*******6668755555558888*********************765..666789 PP

                              EEE- CS
                       B3  95 kvfr 98 
                              +++r
  mrna12787.1-v1.0-hybrid 274 SIIR 277
                              8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.84E-1218115No hitNo description
SMARTSM010190.01320117IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-1120116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.34820117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1122115IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-928115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-13170277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-11172277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-10177277No hitNo description
SMARTSM010192.3E-5183279IPR003340B3 DNA binding domain
PfamPF023622.1E-10190277IPR003340B3 DNA binding domain
PROSITE profilePS508639.516212279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGERNKNGKR PAVSERSPGF CLRIQSREDL KDGKKEIPPA AVRKYGDQIA DHIFLKVPNC  60
GTHWKIELRT SPRRDRMWLE KGWEELASFY LLDQGDSATF TAEGEDAHFR IRIFSWDDME  120
IYYPIRGGGA DLSRPKRKET RAEVEAEAGA ISVSAGSSAD EHQNDISKVS SFRSDRPCLN  180
VPITATSLTT RVFINSAFAL EHFCKDGSCC DLTLQNTLGD TTWTVQCISY AISDGRMRTV  240
LSGAGWKSFR QDNLLEEGDV LVLEVIEERR CRVSIIRVQK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12787.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7915451e-112JQ791545.1 Rosa rugosa Rdr1 homologous region genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307941.10.0PREDICTED: uncharacterized protein LOC101297965
TrEMBLA0A2P6SPA61e-176A0A2P6SPA6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307941.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2215024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-09B3 family protein