PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12786.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 857aa    MW: 97120.4 Da    PI: 6.6342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12786.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-1133119997
                              HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                                lk g   lp   ++e+g++ + +  + l+    g+ W+++l+ + +++r++l+kGW+eF++   L++gD+ +F+++g+ s f  
  mrna12786.1-v1.0-hybrid  33 EDLKDGKKELPPAAVREYGHQMADH--MFLKVpNCGEHWKIELRTSPRRDRMWLEKGWEEFASFYLLDQGDMATFSFEGEhSHF-- 114
                              5567777889********9998886..555553479*******99999999**************************9976777.. PP

                              EEEEE CS
                       B3  93 vvkvf 97 
                              +v+++
  mrna12786.1-v1.0-hybrid 115 HVSIY 119
                              88876 PP
2B336.67.9e-12385471997
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                                lk g   lp   ++e+g++ + ++ l++ +  g+ W+++l+ + +++r++l+kGW+eF++   L++gD+ +F+++g+ s f  +
  mrna12786.1-v1.0-hybrid 385 EDLKDGKKELPPAAVREYGHQMADHMLLKVPN-CGEHWKIELRTSPRRDRMWLEKGWEEFASFYLLDQGDMATFSFEGEhSHF--H 467
                              5667777889*********9999987777555.89*******99999999**************************9976777..8 PP

                              EEEE CS
                       B3  94 vkvf 97 
                              v+++
  mrna12786.1-v1.0-hybrid 468 VSIY 471
                              8876 PP
3B344.33.1e-145796561385
                              TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                              s r+ +   fa+eh +k  +  ++tl++ +g ++W+++++  +++ gr   ++ ++GWk F ++n+L+egD++v++l+
  mrna12786.1-v1.0-hybrid 579 SFRVFINQAFAAEHFYKADTCCDVTLQNIQGdKVWTIQCCSyKRSNGRmqaIISGAGWKAFRQDNHLEEGDICVLELH 656
                              4679999*******77777888******8888*******6643333335668899********************975 PP
4B333.76.6e-11688777596
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                              l+  d   +gr  l+   ++++g++      + l+   + + W+vkl+ + ++++++l++GWk F +   L+eg+ +vF +dg+ s
  mrna12786.1-v1.0-hybrid 688 LLELDDIIEGRKELSAAAVKKYGHQMGD--HIFLKVpNWEEPWKVKLSKSPCGNHMWLEEGWKAFTQFYLLEEGELLVFNYDGDhS 771
                              5556666677778888889999888555..5777775688*******77777777***************************9988 PP

                              EE..EEEE CS
                       B3  89 efelvvkv 96 
                               f  +v++
  mrna12786.1-v1.0-hybrid 772 HF--RVRI 777
                              88..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1222121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1223119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-1223120No hitNo description
PROSITE profilePS5086311.36425122IPR003340B3 DNA binding domain
SMARTSM010190.00326122IPR003340B3 DNA binding domain
PfamPF023623.3E-931119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-6226277IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-7226278IPR003340B3 DNA binding domain
PROSITE profilePS508638.416229295IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-6230277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-12374473IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-12375472No hitNo description
Gene3DG3DSA:2.40.330.102.5E-12375471IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.42377474IPR003340B3 DNA binding domain
SMARTSM010190.0033378474IPR003340B3 DNA binding domain
PfamPF023621.5E-9383471IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12560656IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-4568669IPR003340B3 DNA binding domain
CDDcd100174.02E-10579655No hitNo description
PfamPF023621.6E-11579656IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-9580656IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.107602670IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-12679779IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-13679780IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-17682778No hitNo description
SMARTSM010190.0012684781IPR003340B3 DNA binding domain
PfamPF023625.2E-9684777IPR003340B3 DNA binding domain
PROSITE profilePS508639.305728781IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MASSSSSLAE KEKGHGVSEE DSPAFCLRIF SREDLKDGKK ELPPAAVREY GHQMADHMFL  60
KVPNCGEHWK IELRTSPRRD RMWLEKGWEE FASFYLLDQG DMATFSFEGE HSHFHVSIYS  120
WDDMEIEYPI RSGGAGVSTP ERKEIGTEAV AIASSLSHRS SVAVRGKDKV RRRRRRQTGF  180
EAEARAISVS SRCSADEHEY DTSQMSSFRS DKPFLDIRIP AKHLSCRVNI QGDRAWTIQC  240
TSYKRSNGRI EAIISGTGWR AFRQDNHLEE GDICVLEDNH LEEGDVLGLE VIEERRCRLQ  300
SFNNLSSKVK IPSMGNAHNS TTCSFELVHN SQASSPVVLL FDSFGTSKLW VQMASSSSSL  360
AGMGKRHGVS EEDSPAFCLR IFSREDLKDG KKELPPAAVR EYGHQMADHM LLKVPNCGEH  420
WKIELRTSPR RDRMWLEKGW EEFASFYLLD QGDMATFSFE GEHSHFHVSI YSWDDMEIKY  480
PIRSGGADAS PPERKEIGTE AVAVAISSSP RSPAAVRVRG KDRVRRRRKR QTGFESEARA  540
ISVSPRCLAD EHEYDASQMS SFRSDKPFLD IRIPAKTLSF RVFINQAFAA EHFYKADTCC  600
DVTLQNIQGD KVWTIQCCSY KRSNGRMQAI ISGAGWKAFR QDNHLEEGDI CVLELHLASS  660
SMASTPNRDR KGKRPAVPED YPFFCVRLLE LDDIIEGRKE LSAAAVKKYG HQMGDHIFLK  720
VPNWEEPWKV KLSKSPCGNH MWLEEGWKAF TQFYLLEEGE LLVFNYDGDH SHFRVRIIGW  780
DDMEIHYPSP GMFLENVLML LLICKMYAHR CVTGNEVRAV IISSGSSGDE QENEARVIAI  840
SSGSSGDEHE IEARAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RRRRRR
2522529RVRRRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12786.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7915451e-113JQ791545.1 Rosa rugosa Rdr1 homologous region genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307939.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011470193.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011470194.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6SP921e-169A0A2P6SP92_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307939.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2215024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-10B3 family protein