PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12744.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28066 Da PI: 10.4138 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.7e-12 | 79 | 139 | 37 | 92 |
EEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 37 tledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +++ + ++W+++++ +++ gr ++ ++GWk F ++n+L+egD++v++++++ ++++ mrna12744.1-v1.0-hybrid 79 SVNIQGDKVWTIQCCSyKRSNGRmqaIIAGAGWKAFRQDNHLEEGDICVLEVIEEpAGTTP 139 45556679******6643333335669999*********************9988555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 9.46E-8 | 61 | 129 | No hit | No description |
Pfam | PF02362 | 1.6E-9 | 79 | 140 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-8 | 82 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-8 | 82 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDEMSSRPRP ATDSSPDSED RVRRRRRRQI GFEAEARAIS VSPRCLADEH EYDTSQMSSF 60 RSDKPFLDIR IPAKIMSFSV NIQGDKVWTI QCCSYKRSNG RMQAIIAGAG WKAFRQDNHL 120 EEGDICVLEV IEEPAGTTPT IINRTLRVNK SVRKLKKFFS SFPTKQKGHP SKFGTSTACT 180 PNRDRKGKRP AVPEDSPFLC VRLLELDDIK EGRKGPIRNG RKCQPKRNPH KAFLASHADI 240 PVELPSLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 27 | RVRRRRRR |
2 | 22 | 27 | RRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12744.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ455834 | 6e-53 | HQ455834.1 Rosa multiflora breeding line 88/124-46 black spot resistance muRdr1 gene locus, complete sequence. | |||
GenBank | JQ791545 | 6e-53 | JQ791545.1 Rosa rugosa Rdr1 homologous region genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307939.1 | 2e-60 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_011470193.1 | 2e-60 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_011470194.1 | 2e-60 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A2P6SP92 | 3e-49 | A0A2P6SP92_ROSCH; Putative transcription factor B3-Domain family | ||||
TrEMBL | J7G0R3 | 1e-48 | J7G0R3_ROSRU; Transcription factor | ||||
STRING | XP_004307939.1 | 6e-60 | (Fragaria vesca) |
Link Out ? help Back to Top | |
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Phytozome | mrna12744.1-v1.0-hybrid |