PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12709.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 310aa    MW: 33921.9 Da    PI: 9.4921
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12709.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.49.9e-33150206158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  mrna12709.1-v1.0-hybrid 150 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHQHALNRVRGSGGRF 206
                              57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.7E-36148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.247149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-28152206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24152174IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860154174IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPLNTNCMSW NPNERQVSPP VSKDVSFKME LPPQLHHDAK HLGLQVQPDP GSGTTQSIGQ  60
SQGQCVSSES GEDDARGKGV EGTMKPAFLS NLDFMPHPSQ AGYSNVVTQF HPYADPYYGA  120
FVTPYGPQAM PPMVGMGPPR VPLPLDLQED GPIYVNAKQY HGILRRRQSR AKLEAQNKLL  180
KARKPYLHES RHQHALNRVR GSGGRFLSKK ELQQYDQNHT SSSNDHVSGS IDFHQKDTPQ  240
RENHHSGSND LVTSVASHSG ITSVSGTNAM FRQPDRRFSG GMSSHMSGAM QFSGRLMGGG  300
NQHCASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21150211263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12709.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460478.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_011460482.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A2P6RKI20.0A0A2P6RKI2_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004287602.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.44e-36nuclear factor Y, subunit A8