PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12667.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 463aa    MW: 52873.8 Da    PI: 5.0454
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12667.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.81.1e-301192252102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEE CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweF 81 
                              Fl+k++++++d+e++ ++sws++ +sf+v d +ef+k++LpkyFkhsnfaSFvRQLn+Y  ++  +   +s        +++ weF
  mrna12667.1-v1.0-hybrid 119 FLNKTFQVVDDPETDPIVSWSQDHQSFIVRDCHEFSKTILPKYFKHSNFASFVRQLNTYVNTSFINFIFDSYMtgfkkvDPDRWEF 204
                              9**********************************************************6555555444433334443359***** PP

                              EESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  82 khksFkkgkkellekikrkks 102
                              +++ F+ gkk+ll++ikr+++
  mrna12667.1-v1.0-hybrid 205 ANEGFQGGKKHLLKSIKRRSR 225
                              ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-29114223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-47115223IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-33115223IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-13119142IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-27119223IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-13157169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-13170182IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVVSVGGDGS CSPFSSQAQI SQPKEAPHEA VVVKEEEKEE EEALNCKGGD FHGSSSNEKL  60
KESKPEVVQI KEESIDFVVD DYDGRDCFNY GFSGSYSSSS SKVLPKPMEC LLENGPPPFL  120
NKTFQVVDDP ETDPIVSWSQ DHQSFIVRDC HEFSKTILPK YFKHSNFASF VRQLNTYVNT  180
SFINFIFDSY MTGFKKVDPD RWEFANEGFQ GGKKHLLKSI KRRSRYNRQP QGSNVSVNST  240
KKARLDAQLE TLKKDQDVLK DEILNLKQQQ KYSQHQLIAF EERIQTSECK QQTMLLFLTE  300
TTREPNFVER LMQKRVMKRE LEGGDLAKRR RLISAQGFED FGDCGDQPQV FADRLPEAEL  360
ATQQQETPLP ASLVDKSCSS VQNNKPQAEV HYVYHDVSKK LLDENSVFDD ECAVNDSNVY  420
QELEDLITRH HNFDDLIVKP HDWSGYVSNY LLQRSENGDT NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1811722327129Heat shock factor protein 1
5d5v_B1e-1811722327129Heat shock factor protein 1
5d5v_D1e-1811722327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222LKSIKRR
2327331KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12667.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287575.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A1B0VGF50.0A0A1B0VGF5_FRAVE; Heat shock factor A9a
STRINGXP_004287575.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-73heat shock transcription factor A2