PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12663.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 698aa    MW: 76061.9 Da    PI: 8.0943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12663.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08357377525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C++f ++G C +GdrC F+H
  mrna12663.1-v1.0-hybrid 357 PCDNFVKNGSCIRGDRCLFSH 377
                              7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.516298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5298323IPR000571Zinc finger, CCCH-type
SMARTSM003560.052299324IPR000571Zinc finger, CCCH-type
SMARTSM003560.21327353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.352327354IPR000571Zinc finger, CCCH-type
SMARTSM003560.064355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6356383IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5357377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.798357380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
METSVSAGGA EESLIPITEV AQFKAPEHFS QDVPGTFGFS LDKNMVGDAS KPSGSRGKSL  60
SQIANDLEEE HEMLPKENKM EMLCTRNAVN SPNHMSDVEE GEISDDEGMD DRSTDMILHD  120
AVRSEENNEV QILKDVDDPS SGKEALVKEF DSSSFLSSIA DNVQSPRGEE IRESRTKTIG  180
RPGVVQGKTM EAIKEGGYDP VLESRRIEEK YSGIVRGICF PEACTNNQAS HEKISENNEA  240
GSCGTTYEDE GDAGASKKRK RPSKEKKQRK KAKERKKRAE MNRKQGVNRL KLHCIEKPKT  300
VVFCRHYIAG RCHESDKCKF SHDTVPLTKS KPCCHFARHS CLKGDDCPFD HQLSKYPCDN  360
FVKNGSCIRG DRCLFSHKIL SKEEGATATS KPELVTPSVR GSSRSAQVKI GSPSQKNSHA  420
LPHSTGTHSH NNTELIMART LLEQPTMSTK EFSFLSTGKP SLVHSNMSQQ GVSAPDRNTG  480
AKARNLMQQS PSSSILNTKD NIMTTPPAVT PKGINFLSFG KASPDGSIGK NQNHHQTSQG  540
VSETVQNFNT APKVIQPAQP KAADFLSVGK VPMADSSCGN PFKLTSTSDN GNSTCFGEGK  600
SVFDNPQISS AISSRLLPSP LTSGQSSDYT ASRFKDTVNQ RALCSTLAFA AKYESKKTNQ  660
SFGSTFTQVD RETKQNDSGK VFNILDFLSS ISSTTKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258277RKRPSKEKKQRKKAKERKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12663.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460247.10.0PREDICTED: zinc finger CCCH domain-containing protein 65
TrEMBLA0A2P6R8380.0A0A2P6R838_ROSCH; Putative transcription factor C3H family
STRINGXP_004288957.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323