PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12658.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 610aa    MW: 68051 Da    PI: 7.7961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12658.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13422467555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h + Er+RR+++N++f+ L++llP+      +K +Ka++L+ A +Y+ sLq
  mrna12658.1-v1.0-hybrid 422 HMISERKRREKLNESFHSLKSLLPPG-----TKKDKASVLTTARDYLTSLQ 467
                              8899********************97.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-12419470No hitNo description
Gene3DG3DSA:4.10.280.107.0E-16419486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17419485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10422467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MTRRYSVNSD KLNQIGSNRD LALSLLPPLY LYMDTAFELD EVSRANFLKL VMQSFSCSYI  60
CLWRSYFPNC LMFFDGVYDE ENQTGSSSSS GVSLARRLFD EYRLSIFPIV QNECVPGFAF  120
RNSLTYVELQ EMDLQRLASV QIQKQFYQEA RIKTAVFMGC KSGEIELGFA NVSQMNVKKE  180
LIMRSWMLPE AFSKSQLLSP RTVEGASTRA NTEQQNQLSS SSSSLRSLST MDSPECSSLI  240
FNTVQTSTAP SSLNIPPDQV FANTNFTSLL QPVVSPTTNI FSSTSTSPHQ QAMQAISRMR  300
GNIHLPAPEI EDAEITRAIL AVLTSPSSSP SPAISPHQLS SDSAPSPSHH GLLNPKPCSA  360
FKHYISSPLG PRTQTKGAAN LGVRKQTMVK RSISFLRSLN LLRIRDQSMQ AATRPTTSQL  420
HHMISERKRR EKLNESFHSL KSLLPPGTKK DKASVLTTAR DYLTSLQAQV DELSKRNQQL  480
EAAARLITKE EDDEEEEAGS SSTERVSVTL THVSGSTTDQ NQRIVALQVI VRSGECSTED  540
IVIRILEFLK QVNNMSLMSM EASTWKTELH PNINRVVLRL RVDNDQANEW DESAFQEAVR  600
RVVADVAYK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425430ERKRRE
2426431RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12658.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288955.20.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A2P6RK960.0A0A2P6RK96_ROSCH; Putative transcription factor bHLH family
STRINGXP_004288955.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-69bHLH family protein