PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12646.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 24512.7 Da PI: 6.3048 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.3 | 1.1e-37 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCa+Ck++r+kC ++C lapyfp ++ ++f+n+hklFG+sn++k+++ +++++r++a++s++ e++a+ +dPv+G++gvi++l q mrna12646.1-v1.0-hybrid 13 ACASCKHQRKKCDSNCELAPYFPGSKYNEFQNAHKLFGVSNIVKIMSWIEPHQRQAAADSILIEGNAWKNDPVHGCYGVIKDLAAQ 98 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ +++l++++++ mrna12646.1-v1.0-hybrid 99 VAFQEKQLSVVNQH 112 *********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.632 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-35 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDTESSPSPV NHACASCKHQ RKKCDSNCEL APYFPGSKYN EFQNAHKLFG VSNIVKIMSW 60 IEPHQRQAAA DSILIEGNAW KNDPVHGCYG VIKDLAAQVA FQEKQLSVVN QHLAFHKQQQ 120 KIKLEQDQSD YFSDLPDLPD ELMGDVKVFE RGHNYRPNLV GAADEERSFD MELRDEDENP 180 ILPLRRLNNA WSLWTMKKLQ KTRLLAWNIE TVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 14 | 113 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 14 | 113 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12646.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460121.1 | 1e-134 | PREDICTED: LOB domain-containing protein 9-like | ||||
TrEMBL | A0A2P6RKC8 | 6e-77 | A0A2P6RKC8_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_008241869.1 | 5e-56 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-35 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | mrna12646.1-v1.0-hybrid |