PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12642.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 556aa    MW: 61340.9 Da    PI: 7.3147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12642.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06275297426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              +lC  f  +G C++G++C+F H+
  mrna12642.1-v1.0-hybrid 275 RLCFKFVSSGSCPRGETCNFQHD 297
                              566667778*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.13E-387194No hitNo description
PROSITE profilePS5010313.281271299IPR000571Zinc finger, CCCH-type
SMARTSM003560.0067273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5275300IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-6275298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652303331IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011305330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4308332IPR000571Zinc finger, CCCH-type
PfamPF046771.6E-29348449IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541974.04E-5350438IPR011146HIT-like domain
PfamPF046764.3E-17470552IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAPPKILLCG DVSGNLKQLF KRVVSVNKSA GPFDALFCVG QFFPNSADQL DEFSGYLEGR  60
AEIPIPTYFI GDYGVGSAKF LLAASKDAAN QGFKLDGLKS SVSQQFGTYS EDDVAALRAI  120
AEDPGIVDFG VTNKAATSDV PPRASEPSGT DSMVAELVAE IKPRYGTKGV FYAREPYSNV  180
DAVHVTRFIG LAPVGNKDKQ KFLHALSPTP ASTMSAIEIQ TKTSNTTVSP YTYIEGTANA  240
KEGAKRSSDS VSDSDSQYWR YDVSQKRQKH GDGNRLCFKF VSSGSCPRGE TCNFQHDMDA  300
REQSLRGVCF EFMNKGKCER GADCKFKHSL QDEGESNSHK RRTGNSTSSK IESHLFISLG  360
EHYYCALAKG PLVEDHVLLI PIGHSPNTLS LPSECEIELG KFQDSLKKFY KKQEKEVVFF  420
EWASKRSTHA NLQVVPIPSA KAASVQNIFH LAADRLGFKF MTTKFSNSSD GRKSLRTQFD  480
RNFSFFYAEL PDGTVLSHLI EESEKFLAQF GREVMAGLLN KADRADWRNC TDSKEEETKM  540
VANFKSRFAE FDPNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12642.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287564.10.0PREDICTED: zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2P6RKA50.0A0A2P6RKA5_ROSCH; Putative transcription factor C3H family
STRINGXP_004287564.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-06C3H family protein