PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12624.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 358aa    MW: 39269.8 Da    PI: 8.4933
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12624.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19204237134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  mrna12624.1-v1.0-hybrid 204 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 237
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-13197238No hitNo description
PROSITE profilePS5011412.756198234IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-20198249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15202237IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-14203235No hitNo description
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
PfamPF003205.1E-17204237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAPPFLQLST IGSHDHDLDQ YDHHHHDLFN YLEPQSSFSS TTSSLSSPIF LSPAQVQGPI  60
SDHYYREPQD FQFQLLEADH IVSYGGSCDH DQTLGNEGEK GTVINLSIDP KHGADDDHRD  120
HENRSARAEN ISVKWMSSKM RIMRKMTNPD QTISSHNNTT AATNDGTTAR VNFSASHNFE  180
EQKLHPLSPL GTDSSYSTNP IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM  240
AAAAAAANST TLAVEAAPSM IKTSKVKLKD NKTIPFKKRC HKLAISPSPR GKSKTKLRFE  300
DFSVSSMNQN SGTDPPPPPT TTTTTTTTTT TFQRVFPQDE KEAAILLMAL SCGLVRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12624.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287558.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A2P6RK760.0A0A2P6RK76_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004287558.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-22GATA family protein