PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12617.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 952aa    MW: 104983 Da    PI: 9.2049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12617.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-16282372198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv   s++ +++ l +pkkfa e+g++   s   t+  + g +W+v l  ++  +r+++ +GW eF++   L  g f+vF+++g
  mrna12617.1-v1.0-hybrid 282 FFKVI-LSSTIENQKLDIPKKFALEYGEE--LSNGATVIVPAGDVWQVGL--ERAHKRIWFVDGWPEFAEHYSLTGGQFLVFSYQG 362
                              66666.466777777***********855..77789999***********..********************************** PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              +s f  +v++f+
  mrna12617.1-v1.0-hybrid 363 DSIF--HVRIFD 372
                              9999..999997 PP

2B3382.9e-12479574199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ff v ++  +l+++ l++p  +a +++    ++  +++ed++ ++W+++++++    ++ +++G  eF ++n+Lk+gD+++ +l++
  mrna12617.1-v1.0-hybrid 479 FFAVILQQGHLNKSYLYVPSAYAMRYMRG--CPEYIKFEDSTANQWDIRCRFTTD-TAVRIGRGCAEFFRENNLKTGDVLLYELIN 561
                              677777888999999***********744..7789***************76554.4799*************************9 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +++  l+++v+r+
  mrna12617.1-v1.0-hybrid 562 KKDVVLKFSVLRA 574
                              9999899998875 PP

3B3543.1e-17633723799
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              + + ++++ +++p +f+++h +   ++  + l+ ++ ++W  +++y+ ++ ++ + kG   F+k+n+L++gD++vF+l++++ + +
  mrna12617.1-v1.0-hybrid 633 RDYLMTNSVVYVPHEFMKDHLLG--CGSSINLRASRDEQWPARCTYDPRRHTMKIHKGFGTFCKENNLEAGDVCVFELIKNEAADF 716
                              6677889999**********666..5567********************999***************************9999999 PP

                              EEEEE-S CS
                       B3  93 vvkvfrk 99 
                              +v+vf +
  mrna12617.1-v1.0-hybrid 717 KVSVFHA 723
                              *999975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501068.60775132IPR001478PDZ domain
Gene3DG3DSA:2.30.42.106.7E-594132IPR001478PDZ domain
SuperFamilySSF501564.92E-694169IPR001478PDZ domain
CDDcd001361.70E-695132No hitNo description
PROSITE profilePS509039.832174214IPR024934Rubredoxin-like domain
SuperFamilySSF578021.38E-8175217No hitNo description
Gene3DG3DSA:2.20.28.101.7E-7176216IPR004039Rubredoxin-type fold
SuperFamilySSF1019366.08E-21275376IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-21280376IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.887281374IPR003340B3 DNA binding domain
PfamPF023626.0E-12282372IPR003340B3 DNA binding domain
SMARTSM010198.1E-17282374IPR003340B3 DNA binding domain
CDDcd100171.01E-15282372No hitNo description
Gene3DG3DSA:2.40.330.101.1E-15472573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15473572IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-12478573No hitNo description
PROSITE profilePS5086310.955479575IPR003340B3 DNA binding domain
PfamPF023624.6E-10479574IPR003340B3 DNA binding domain
SMARTSM010196.9E-7479575IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20620724IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-18622724IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125627724IPR003340B3 DNA binding domain
CDDcd100173.48E-15628721No hitNo description
SMARTSM010191.1E-12628724IPR003340B3 DNA binding domain
PfamPF023627.5E-15633723IPR003340B3 DNA binding domain
PfamPF067493.3E-28798891IPR009606Protein of unknown function DUF1218
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MSPAVLAGSS SSSCSAAFNR HQYKTPQITS PKSLAPLQCQ KTSFQGLSLG EAKRGVSESF  60
IAENISSATV RRGRLLSIVA RTAGAAKTIE AEVDKPLGLT LGQKPGGVVT ITAVEGGGNA  120
AKAGLKAGDQ VLYTSSFFGD ELWPADKLGF TKTAINAKPD NVYFVVSRGG AEARATHICL  180
DCGFIYTLSK PFDEQPDTYA CPQCIAPKKR FARYDVNTGK PIGGGLPPIG VIIGLVAGLA  240
GVGALLSLLT FGVVMTLSSL TVFVLKTPRR VVNLLSDSVA NFFKVILSST IENQKLDIPK  300
KFALEYGEEL SNGATVIVPA GDVWQVGLER AHKRIWFVDG WPEFAEHYSL TGGQFLVFSY  360
QGDSIFHVRI FDFSCCEIEY PSVGQIIKHE EYVEHDVCVD QHVTRKRKSV AIAKKLKKAK  420
LMVQRMPPSH DDPRRKKEYK EIFVGNMAAY TFPYMITRIA KERQKLIHAI QMFKLENPFF  480
AVILQQGHLN KSYLYVPSAY AMRYMRGCPE YIKFEDSTAN QWDIRCRFTT DTAVRIGRGC  540
AEFFRENNLK TGDVLLYELI NKKDVVLKFS VLRAAGNAVM VHGKKKNSDI HDRGTLYLSK  600
KINAMVISRE TKKAMKAAKA LKIENPAFMV ILRDYLMTNS VVYVPHEFMK DHLLGCGSSI  660
NLRASRDEQW PARCTYDPRR HTMKIHKGFG TFCKENNLEA GDVCVFELIK NEAADFKVSV  720
FHASDYASVN RVSESKREFE MERKELLVCC VVGLLGLVSA ATGFAAEATR IKGSQVQFVN  780
ATQCEYPRTA ALGLGFTAAV SLMVAHIIIN VSTGCICCKR IPQPSNSNWT IALICFVVSW  840
FSFVIAFLLL LTGSALNDQH GVESMYFGSY YCYVVKPGVF AGGAVLSLAS VILGIFYYIT  900
ISSAKKNNDN LCGNGVQGPA IAMGQPQFPA HNQTQEPVFV HEDTYMRRQF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1845772626145B3 domain-containing transcription factor VRN1
4i1k_B1e-1845772626145B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403408TRKRKS
2405416KRKSVAIAKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12617.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein