PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12617.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 952aa MW: 104983 Da PI: 9.2049 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.6 | 3.6e-16 | 282 | 372 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffkv s++ +++ l +pkkfa e+g++ s t+ + g +W+v l ++ +r+++ +GW eF++ L g f+vF+++g mrna12617.1-v1.0-hybrid 282 FFKVI-LSSTIENQKLDIPKKFALEYGEE--LSNGATVIVPAGDVWQVGL--ERAHKRIWFVDGWPEFAEHYSLTGGQFLVFSYQG 362 66666.466777777***********855..77789999***********..********************************** PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +s f +v++f+ mrna12617.1-v1.0-hybrid 363 DSIF--HVRIFD 372 9999..999997 PP | |||||||
2 | B3 | 38 | 2.9e-12 | 479 | 574 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ff v ++ +l+++ l++p +a +++ ++ +++ed++ ++W+++++++ ++ +++G eF ++n+Lk+gD+++ +l++ mrna12617.1-v1.0-hybrid 479 FFAVILQQGHLNKSYLYVPSAYAMRYMRG--CPEYIKFEDSTANQWDIRCRFTTD-TAVRIGRGCAEFFRENNLKTGDVLLYELIN 561 677777888999999***********744..7789***************76554.4799*************************9 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+++v+r+ mrna12617.1-v1.0-hybrid 562 KKDVVLKFSVLRA 574 9999899998875 PP | |||||||
3 | B3 | 54 | 3.1e-17 | 633 | 723 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + + ++++ +++p +f+++h + ++ + l+ ++ ++W +++y+ ++ ++ + kG F+k+n+L++gD++vF+l++++ + + mrna12617.1-v1.0-hybrid 633 RDYLMTNSVVYVPHEFMKDHLLG--CGSSINLRASRDEQWPARCTYDPRRHTMKIHKGFGTFCKENNLEAGDVCVFELIKNEAADF 716 6677889999**********666..5567********************999***************************9999999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+vf + mrna12617.1-v1.0-hybrid 717 KVSVFHA 723 *999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50106 | 8.607 | 75 | 132 | IPR001478 | PDZ domain |
Gene3D | G3DSA:2.30.42.10 | 6.7E-5 | 94 | 132 | IPR001478 | PDZ domain |
SuperFamily | SSF50156 | 4.92E-6 | 94 | 169 | IPR001478 | PDZ domain |
CDD | cd00136 | 1.70E-6 | 95 | 132 | No hit | No description |
PROSITE profile | PS50903 | 9.832 | 174 | 214 | IPR024934 | Rubredoxin-like domain |
SuperFamily | SSF57802 | 1.38E-8 | 175 | 217 | No hit | No description |
Gene3D | G3DSA:2.20.28.10 | 1.7E-7 | 176 | 216 | IPR004039 | Rubredoxin-type fold |
SuperFamily | SSF101936 | 6.08E-21 | 275 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-21 | 280 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.887 | 281 | 374 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-12 | 282 | 372 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-17 | 282 | 374 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.01E-15 | 282 | 372 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 472 | 573 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 473 | 572 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.23E-12 | 478 | 573 | No hit | No description |
PROSITE profile | PS50863 | 10.955 | 479 | 575 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-10 | 479 | 574 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-7 | 479 | 575 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 620 | 724 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-18 | 622 | 724 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.125 | 627 | 724 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.48E-15 | 628 | 721 | No hit | No description |
SMART | SM01019 | 1.1E-12 | 628 | 724 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-15 | 633 | 723 | IPR003340 | B3 DNA binding domain |
Pfam | PF06749 | 3.3E-28 | 798 | 891 | IPR009606 | Protein of unknown function DUF1218 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
MSPAVLAGSS SSSCSAAFNR HQYKTPQITS PKSLAPLQCQ KTSFQGLSLG EAKRGVSESF 60 IAENISSATV RRGRLLSIVA RTAGAAKTIE AEVDKPLGLT LGQKPGGVVT ITAVEGGGNA 120 AKAGLKAGDQ VLYTSSFFGD ELWPADKLGF TKTAINAKPD NVYFVVSRGG AEARATHICL 180 DCGFIYTLSK PFDEQPDTYA CPQCIAPKKR FARYDVNTGK PIGGGLPPIG VIIGLVAGLA 240 GVGALLSLLT FGVVMTLSSL TVFVLKTPRR VVNLLSDSVA NFFKVILSST IENQKLDIPK 300 KFALEYGEEL SNGATVIVPA GDVWQVGLER AHKRIWFVDG WPEFAEHYSL TGGQFLVFSY 360 QGDSIFHVRI FDFSCCEIEY PSVGQIIKHE EYVEHDVCVD QHVTRKRKSV AIAKKLKKAK 420 LMVQRMPPSH DDPRRKKEYK EIFVGNMAAY TFPYMITRIA KERQKLIHAI QMFKLENPFF 480 AVILQQGHLN KSYLYVPSAY AMRYMRGCPE YIKFEDSTAN QWDIRCRFTT DTAVRIGRGC 540 AEFFRENNLK TGDVLLYELI NKKDVVLKFS VLRAAGNAVM VHGKKKNSDI HDRGTLYLSK 600 KINAMVISRE TKKAMKAAKA LKIENPAFMV ILRDYLMTNS VVYVPHEFMK DHLLGCGSSI 660 NLRASRDEQW PARCTYDPRR HTMKIHKGFG TFCKENNLEA GDVCVFELIK NEAADFKVSV 720 FHASDYASVN RVSESKREFE MERKELLVCC VVGLLGLVSA ATGFAAEATR IKGSQVQFVN 780 ATQCEYPRTA ALGLGFTAAV SLMVAHIIIN VSTGCICCKR IPQPSNSNWT IALICFVVSW 840 FSFVIAFLLL LTGSALNDQH GVESMYFGSY YCYVVKPGVF AGGAVLSLAS VILGIFYYIT 900 ISSAKKNNDN LCGNGVQGPA IAMGQPQFPA HNQTQEPVFV HEDTYMRRQF T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-18 | 457 | 726 | 26 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-18 | 457 | 726 | 26 | 145 | B3 domain-containing transcription factor VRN1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 403 | 408 | TRKRKS |
2 | 405 | 416 | KRKSVAIAKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12617.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12617.1-v1.0-hybrid |