PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12582.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family E2F/DP
Protein Properties Length: 360aa    MW: 39584.3 Da    PI: 5.8572
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12582.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.71.7e-2780167271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekn 65 
                              ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+
  mrna12582.1-v1.0-hybrid  80 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpingvaspdqnlisqqqyDEKNIRRRVYDALNVLMAMDIISK-DKK 161
                              789********...*****999************************************************************.*** PP

                  E2F_TDP  66 eirwkg 71 
                              ei+wkg
  mrna12582.1-v1.0-hybrid 162 EIQWKG 167
                              ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.6E-1252359IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.8E-4575172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-3479167IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.3E-2581167IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.71E-2082168IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.94E-43172275IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-41173283No hitNo description
SMARTSM011381.7E-61174357IPR014889Transcription factor DP, C-terminal
PfamPF087814.2E-40175286IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGTRSQQPNP AAADDDDDMR GGQSVSMSGS MGSPSSRSEQ TATPAGDSLR LNHPDVNGDD  60
AGTAGKKKKR GQRAAGGDKN GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFSDPING  120
VASPDQNLIS QQQYDEKNIR RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSLNDIEELK  180
TERLGLRSRI EKKAVYLQEL EEQYVGLQNL IQRNEQLYCS GDAPSGGVSL PFILVQTRPH  240
ATVEVEISED MQLVHFDFNS TPFELHDDNY VLKAMKFCDR PQADGNHGMT QPVTPQADGN  300
HGMTQNYVAD GGEGSSMSAM YQQHIPPQIP LPPMVNTPLR TPTSPPLPGI IKARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3673172193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12582.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470129.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-149DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2P6SPV30.0A0A2P6SPV3_ROSCH; Putative transcription factor E2F-DP family
STRINGXP_004307868.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP