PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12562.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 781aa MW: 89641.3 Da PI: 6.7623

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12562.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.4e-26	60	146	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++g+w+v+++++eHn mrna12562.1-v1.0-hybrid 60 DYYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGNWYVYSFVKEHN 141 59*************************************999877....9****************************** PP FAR1 87 Helap 91 Hel p mrna12562.1-v1.0-hybrid 142 HELLP 146 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-24	60	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-28	260	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.855	540	576	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-9	540	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	551	578	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MGHMKSFNPI TSSFEVGEVD AKCRVDLNFP TSTTAMDAAA SVVEEPHDAM EFDSHEAAYD 60 YYKAYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS 120 MHVKRRQNGN WYVYSFVKEH NHELLPAQAH FFRSHRDADP HKNNDVRMRR RKNVNSVSSL 180 FSAYQNVDCL ESYLRNQHDK GRSLSLESGD AQLLLECFMR MQEENPKFYY AVDLNEEHRL 240 RNVFWVDSKG MEDYTNFSDV VFFDTTYFTN KYKMPLVLFI GVNHHIQPTL MGCALIADET 300 VYTFVWLMQT WLIAMGEQAP RVILSDQNNA IKAAIGAVLP GTRHCFSLWH ILEKMHGQLE 360 FLSMWLDTFM AKFNECIFKS WSEEQFEKRW WKLIDEFNLR DIECIQSLYR DRTHWVPTFM 420 RDISFAGLSP TSRSTSLNSS FDKYFQVETS VPEFMERYRV ILEDRYEEEA KANFDAWHET 480 PELKSPSPFE KQLALVYTQE VFKNFQVEVL GAAACHLKKE SEDMTTTTYS VKDIEDEQNY 540 TVEWNESKSD ICCSCRSFEY KGYLCRHAIV VLQMSGVFTI PAKYVLQRWT NTAMSRHAMG 600 EKLDEVQFKV RRYNDLCRRA IILGEEGSLS QESYDVALCA IKEALKQCTS WNTSVESNAK 660 PNDSAIDGVE ESQCGITSDD KISGPKVSAP NKTPTRAGTG KVVARRGKGK LEGTRVGAQD 720 NFHQMHQVSC DTRPPMLMQQ HNVVPPQLHN MVPSMFQNVA PAQFHNMGSP NPVQENRLPQ 780 *

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MGHMKSFNPI TSSFEVGEVD AKCRVDLNFP TSTTAMDAAA SVVEEPHDAM EFDSHEAAYD  60
YYKAYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS  120
MHVKRRQNGN WYVYSFVKEH NHELLPAQAH FFRSHRDADP HKNNDVRMRR RKNVNSVSSL  180
FSAYQNVDCL ESYLRNQHDK GRSLSLESGD AQLLLECFMR MQEENPKFYY AVDLNEEHRL  240
RNVFWVDSKG MEDYTNFSDV VFFDTTYFTN KYKMPLVLFI GVNHHIQPTL MGCALIADET  300
VYTFVWLMQT WLIAMGEQAP RVILSDQNNA IKAAIGAVLP GTRHCFSLWH ILEKMHGQLE  360
FLSMWLDTFM AKFNECIFKS WSEEQFEKRW WKLIDEFNLR DIECIQSLYR DRTHWVPTFM  420
RDISFAGLSP TSRSTSLNSS FDKYFQVETS VPEFMERYRV ILEDRYEEEA KANFDAWHET  480
PELKSPSPFE KQLALVYTQE VFKNFQVEVL GAAACHLKKE SEDMTTTTYS VKDIEDEQNY  540
TVEWNESKSD ICCSCRSFEY KGYLCRHAIV VLQMSGVFTI PAKYVLQRWT NTAMSRHAMG  600
EKLDEVQFKV RRYNDLCRRA IILGEEGSLS QESYDVALCA IKEALKQCTS WNTSVESNAK  660
PNDSAIDGVE ESQCGITSDD KISGPKVSAP NKTPTRAGTG KVVARRGKGK LEGTRVGAQD  720
NFHQMHQVSC DTRPPMLMQQ HNVVPPQLHN MVPSMFQNVA PAQFHNMGSP NPVQENRLPQ  780
*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12562.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307850.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2P6SPW0	0.0	A0A2P6SPW0_ROSCH; Putative transcription factor FAR family
STRING	XP_004307850.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	mrna12562.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]