PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12549.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 397aa    MW: 43437.7 Da    PI: 7.9323
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12549.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.3e-25127171145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  mrna12549.1-v1.0-hybrid 127 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 171
                              79****************************************986 PP
2QLQ64.33e-225288137
                      QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  mrna12549.1-v1.0-hybrid 52 SPFTVSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 88
                             89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-135288IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-165387IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.5765388IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762127171IPR014977WRC domain
PfamPF088794.9E-21128170IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTLADLIGLP LSFCIVVGVG VVEMNSTGGG GGVGVGGNST GNLMGMGMGM RSPFTVSQWQ  60
ELEHQALIFK YMMAGMPVPP DLVLPIQKSF DSISQRFFHP SKEGLLTVRL WINSAVGYCS  120
FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKPVE SQTMTQSSST  180
VTSLIVSGTS SGTVSFQTLP LNSFGNTQGA SSGTNQSHYQ IDSIPFGIPN KDYRYLPGLK  240
PDMGEHSFLS DTSGSNRGLH MDSPLDGTWP VMPSRVTSFP TSTSGDGSVL QNDYRQNSFF  300
NNDFPSGEPL KHEGQPLRPF FDEWPKGRDA WSGLEDERSN QTSFSTTQLS ISIPMTSSDF  360
SATSSQSPHG ESRMQGMFNK SPFPFLISVV KSFTDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12549.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352641e-70AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307837.10.0PREDICTED: growth-regulating factor 4-like
TrEMBLA0A2P6SQ100.0A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004307837.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-44growth-regulating factor 5