PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12474.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 378aa    MW: 42500.9 Da    PI: 8.8106
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12474.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.33e-2480123144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  mrna12474.1-v1.0-hybrid  80 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGKNRSRKPVE 123
                              79***************************************987 PP
2QLQ61.52.3e-211449237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             +FT++Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i++
  mrna12474.1-v1.0-hybrid 14 PFTPSQWQELEHQALIYKYMVSGIPIPPDLLFSIKR 49
                             8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-131349IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.6E-161447IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.5031449IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.31280124IPR014977WRC domain
PfamPF088792.6E-2081123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMSSSSAGRG MRFPFTPSQW QELEHQALIY KYMVSGIPIP PDLLFSIKRS CLDSPPLSSK  60
LFSPHIGWNC FQMGLGRKID PEPGRCRRTD GKKWRCSKEA YADSKYCERH MHRGKNRSRK  120
PVEVFKATLP TSANSNSNSN SNTSPITKIF NPSSNSLSTP FHSLSSLSPN ESSYNSSSSN  180
LDDHPFLYSR PNIGLSQQER STSLFLDSAS YNNPLHPNLE YRPNRFGYGV KEEVDEHAFF  240
SEPSGSVRGF SGSSSSLNHH QNESNWQLTM SCSDSSSKQR TCSALQTEHY PHLQLQNFTD  300
SKRGEETQRT IHHFFDEGPP KDRESSWLDL DANNKSSNSG SASTTRLSIS IPNSAHDFPI  360
YNSRSHHGNY FLPLRLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12474.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4430084e-52AM443008.2 Vitis vinifera contig VV78X166267.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287622.10.0PREDICTED: growth-regulating factor 1 isoform X1
TrEMBLA0A2P6RKI70.0A0A2P6RKI7_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004287622.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-55growth-regulating factor 5