PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12434.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 124aa    MW: 14078.7 Da    PI: 4.8165
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12434.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.3e-1112654296
                             TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                             + + W+vkl+ + ++++++l++GWk F +   L+eg+ +vF +dg+ s f  +v++
  mrna12434.1-v1.0-hybrid 12 WEEPWKVKLSKSPCGNHMWLEEGWKAFTQFYLLEEGELLVFNYDGEhSHF--RVRI 65
                             5688*****77777777***************************987777..6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.743169IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-10468IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-14566No hitNo description
PfamPF023629.0E-91265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-101367IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MGDHIFLKVP NWEEPWKVKL SKSPCGNHMW LEEGWKAFTQ FYLLEEGELL VFNYDGEHSH  60
FRVRIIGWDD MESSIHYPSP GNKVRAVIIS SGSFGDEQEN EARVIVISSG SSGDEHEIEA  120
RAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12434.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470660.18e-87PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6SMG51e-60A0A2P6SMG5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004309106.16e-75(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-07B3 family protein