PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12366.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 353aa MW: 41022 Da PI: 9.4132

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12366.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	52.2	1.3e-16	281	336	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn.vPvGggrrkn 58 ++l+cprC+s+ntkf ++ Pry Ck+C+ Wt GG ++ + +Gg rk+ mrna12366.1-v1.0-hybrid 281 QKLQCPRCESNNTKFSVLKAKRIAGPRYHCKNCKMEWTLGGKIKKpIVLGGVNRKD 336 789***************************************98647788888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-9	281	335	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-16	281	335	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	16.451	283	337	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MADFTLLDSE TEIEASRGTS RTRGNMSEGS SIEGPQRTRL LQHLKDLHEE NKTLMKLVAD 60 KEYPFEIKRI ESYMIDFEEL NSLKIIVNKL EKQNFKLTQA NTQMLLELRS LRNHAHKVQH 120 SNLRPIQETI QVQEVQQPNL QPAQEVIQVN EIQQPNLQPA QARIHVQEFE PPNMQAGQAT 180 IQMQEEEPVL ENSQIFLELR SNVDMLSSTD EAVRECIHMI EQLQGLPNNL TNNEELWIVR 240 DPHYNNTSDI IFVQLQDLLQ MKQSNKSRQS FKIRAGFRKL QKLQCPRCES NNTKFSVLKA 300 KRIAGPRYHC KNCKMEWTLG GKIKKPIVLG GVNRKDLLQQ RVQRVQRRRM KN*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MADFTLLDSE TEIEASRGTS RTRGNMSEGS SIEGPQRTRL LQHLKDLHEE NKTLMKLVAD  60
KEYPFEIKRI ESYMIDFEEL NSLKIIVNKL EKQNFKLTQA NTQMLLELRS LRNHAHKVQH  120
SNLRPIQETI QVQEVQQPNL QPAQEVIQVN EIQQPNLQPA QARIHVQEFE PPNMQAGQAT  180
IQMQEEEPVL ENSQIFLELR SNVDMLSSTD EAVRECIHMI EQLQGLPNNL TNNEELWIVR  240
DPHYNNTSDI IFVQLQDLLQ MKQSNKSRQS FKIRAGFRKL QKLQCPRCES NNTKFSVLKA  300
KRIAGPRYHC KNCKMEWTLG GKIKKPIVLG GVNRKDLLQQ RVQRVQRRRM KN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12366.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288648.1	0.0	PREDICTED: uncharacterized protein LOC101292636
TrEMBL	A0A2P6REW5	1e-150	A0A2P6REW5_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004288648.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32425	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	3e-12	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna12366.1-v1.0-hybrid