PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12330.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 350aa    MW: 39988.7 Da    PI: 10.3014
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12330.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.16e-13159284190
                     FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..................................teke 51 
                              k+Y+eY+++ GF +r++ s k+ ++++e+t+ +fvC  +gk  ++kk                                   ++ +
  mrna12330.1-v1.0-hybrid 159 KYYEEYGRQEGFWIRTQCSVKTrSHSDEVTSCRFVCAHQGKYIRKKKLnegwkkdhqkeicdnenenengdvnveksgdvntKKAA 244
                              69**************998887567899*************988877789*****************************9876777 PP

                     FAR1  52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                               ++ ++ ++ Cka+++v  ek ++kw+v+ ++  HnH+++
  mrna12330.1-v1.0-hybrid 245 DKNCSTAKCRCKATMRVIHEKwSNKWRVSVFKDFHNHKVV 284
                              7788999**********99999***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-4222IPR009057Homeodomain-like
PfamPF031012.4E-10159284IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLAFYHQQYG NKWAKIARFL HGSSLSSGRQ TGRHRFRSTP TVVLPISGVV LLVVWKPPRS  60
GGAAVVPPES QRFRRLFRPS LGLVFEFGLV LRAVFRPISA KLAQLSDFNE DSSPSQCMSP  120
VANTSEVEDG EMNTPIRRVE HLEAPYLGML FESIEEARKY YEEYGRQEGF WIRTQCSVKT  180
RSHSDEVTSC RFVCAHQGKY IRKKKLNEGW KKDHQKEICD NENENENGDV NVEKSGDVNT  240
KKAADKNCST AKCRCKATMR VIHEKWSNKW RVSVFKDFHN HKVVTPARRM KMKSNKYMPK  300
AARSMTEIFY KENLPIAKVH SILGGAHIGF NKRDCYNQGR SYNGARGFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12330.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208966.23e-79protein FAR1-RELATED SEQUENCE 5
TrEMBLM5WTQ76e-78M5WTQ7_PRUPE; Uncharacterized protein
STRINGEMJ101651e-78(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2642523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-07FAR1-related sequence 7