PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna12330.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 350aa MW: 39988.7 Da PI: 10.3014 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.1 | 6e-13 | 159 | 284 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..................................teke 51 k+Y+eY+++ GF +r++ s k+ ++++e+t+ +fvC +gk ++kk ++ + mrna12330.1-v1.0-hybrid 159 KYYEEYGRQEGFWIRTQCSVKTrSHSDEVTSCRFVCAHQGKYIRKKKLnegwkkdhqkeicdnenenengdvnveksgdvntKKAA 244 69**************998887567899*************988877789*****************************9876777 PP FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ ++ ++ Cka+++v ek ++kw+v+ ++ HnH+++ mrna12330.1-v1.0-hybrid 245 DKNCSTAKCRCKATMRVIHEKwSNKWRVSVFKDFHNHKVV 284 7788999**********99999***************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-4 | 2 | 22 | IPR009057 | Homeodomain-like |
Pfam | PF03101 | 2.4E-10 | 159 | 284 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MLAFYHQQYG NKWAKIARFL HGSSLSSGRQ TGRHRFRSTP TVVLPISGVV LLVVWKPPRS 60 GGAAVVPPES QRFRRLFRPS LGLVFEFGLV LRAVFRPISA KLAQLSDFNE DSSPSQCMSP 120 VANTSEVEDG EMNTPIRRVE HLEAPYLGML FESIEEARKY YEEYGRQEGF WIRTQCSVKT 180 RSHSDEVTSC RFVCAHQGKY IRKKKLNEGW KKDHQKEICD NENENENGDV NVEKSGDVNT 240 KKAADKNCST AKCRCKATMR VIHEKWSNKW RVSVFKDFHN HKVVTPARRM KMKSNKYMPK 300 AARSMTEIFY KENLPIAKVH SILGGAHIGF NKRDCYNQGR SYNGARGFN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna12330.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208966.2 | 3e-79 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5WTQ7 | 6e-78 | M5WTQ7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10165 | 1e-78 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26425 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 3e-07 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna12330.1-v1.0-hybrid |