PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12294.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 285aa MW: 29893.1 Da PI: 9.8083

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12294.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	48	141	2	96
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++s++ mrna12294.1-v1.0-hybrid 48 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGASTA 132 78**************************************************************99999766.3444444443333 PP TCP 88 gkaaksaak 96 ++ ++s+++ mrna12294.1-v1.0-hybrid 133 TSLSNSSTT 141 322222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	54	108	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.3E-33	54	143	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSNSEAPNNE QLSNGAAAAA MMMERQQQQQ QTQQQQTAQQ PSSNGVLAVK KPPSKDRHSK 60 VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST 120 VSVSLRGGAS TATSLSNSST TTSSDHKPLL GGGGPTPFIL GKRMRTDDDG KDSDNHHGGN 180 DGGGAVSVVG HHSMSSMLGP AAAAQGGFWA PHFGQVWSFA ATPPPELMSQ QQSVSQQHSL 240 FLQQQPMGEA SAARVGNYLP GHLNLLASLS GGHGNSGRRE DDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12294.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	2e-75	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	2e-75	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	2e-75	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	2e-75	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301414.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2P6QSB4	1e-141	A0A2P6QSB4_ROSCH; Putative transcription factor TCP family
STRING	XP_004301414.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-65	TCP family protein

Link Out ? help Back to Top
Phytozome	mrna12294.1-v1.0-hybrid