PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12189.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25397.5 Da PI: 8.8127 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.4 | 2.2e-09 | 24 | 63 | 10 | 49 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 v+f+kRr++++ KA L+ ++++av+++s++gk y + mrna12189.1-v1.0-hybrid 24 DVSFCKRRKTVFSKALKLCGEHGTRIAVLVLSPRGKPYAF 63 79*********************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0018 | 8 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-10 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-9 | 22 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.867 | 25 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGKRRPCTEE QKRERDVLAS KKGDVSFCKR RKTVFSKALK LCGEHGTRIA VLVLSPRGKP 60 YAFGHTSVDA VLNRSMSNKI KKYVQQSRAS VINEERNMVE RMKEGIENEL KACQTFFDTW 120 PCLNGGPTSG YGNYVVYNHA YYGKNNNGDD GSSWGFEYVE NIMPNSLSQR SEFDDGNYIR 180 GGHAYGNNSY GREESSWGTE CIENVGIGSD VHVLVVGLQR RATCPGV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12189.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464690.1 | 6e-79 | PREDICTED: agamous-like MADS-box protein AGL61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-11 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | mrna12189.1-v1.0-hybrid |