PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12140.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 439aa    MW: 49178.9 Da    PI: 4.4379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12140.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.5e-15301656128
                      NAM   6 rFhPtdeelvveyLkkkvegkk..leleevikevd...iykvePwdLpkkvka....eekewyfFskrdkkya..tgkrknr.atk 79 
                               F+Ptd +lv +yL  k++      + +++++e+d   i+ +ePw +  +++a    +++  yfF++ ++ +a  +gkr +r + +
  mrna12140.1-v1.0-hybrid  30 TFKPTDAQLVGHYLYGKIRMMGqvGNGKQAFPELDvygITGMEPWLIWDCLEAirfpHQDFSYFFTRVKRLSAkgKGKRCSRtVGS 115
                              5****************9877755333445666652226678***99753333333344456***998887763357899994445 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               g W++  ++kev++   +e  g  + L + + +++  ++  W+++e+++
  mrna12140.1-v1.0-hybrid 116 GGKWSENESSKEVYVDgFQEPFGRMRKLRYENSDKEFEHHGAWMIEEFSI 165
                              789***********98556779*********99999999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-1718182IPR003441NAC domain
PROSITE profilePS5100519.90325183IPR003441NAC domain
PfamPF023651.9E-1030165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MASCSSSSSS GSGSRELMRL EELPCGVVRT FKPTDAQLVG HYLYGKIRMM GQVGNGKQAF  60
PELDVYGITG MEPWLIWDCL EAIRFPHQDF SYFFTRVKRL SAKGKGKRCS RTVGSGGKWS  120
ENESSKEVYV DGFQEPFGRM RKLRYENSDK EFEHHGAWMI EEFSIEHPGV VSSDLVLCRM  180
KRNGKSNNKK RKAVEDEEVN AKRAKCFQAE KQVISDSHHE QQQQWQLSDV HVQQQQCGDN  240
VVDRAGLEQG STSAQQQQQI PAPHFDNNYN CTADDVIVSQ NESEHAVLEE DTGWWLENII  300
AWDEDVDPSL YENHSSAADD LTVSVNESTA LQLEEEGTDH NGSVSEGARE ETLPPALLEQ  360
HTSSSPLMSQ QQHLTDDDQA FAFACDNDTI PMDGVSCFQF DDSSNFDFHF ENQYLSEEAT  420
LPVSTSSGDD NGLPRLGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12140.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465731.10.0PREDICTED: uncharacterized protein LOC105351863
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2205423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.14e-06NAC domain containing protein 1