PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12133.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 448aa    MW: 50400.1 Da    PI: 4.2426
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12133.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.22.6e-2231312127
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                              p GfrFhPtd+el+ +yL  k ++++++++   ++e+d+y +vePw++ +++ +   ++++++fF++ +k   +g+r nr + sg+
  mrna12133.1-v1.0-hybrid   3 PTGFRFHPTDQELIGHYLFIKNNSDPVPETGSyLREFDMYgEVEPWTIWEAYGGpllDDQDLFFFTRLKK---HGHRINRRIGSGT 85 
                              79************************8887666*****99568*****7543335557889999998866...589********** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              W++    k+v++k  +++ +g k+ L +  +++ + ++  W+m+ey+
  mrna12133.1-v1.0-hybrid  86 WSQGEPFKSVYAKnnQETPIGKKTKLRYE-NKNVTEQSGCWFMDEYS 131
                              **99999****985455559999999997.677777999*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.7442147IPR003441NAC domain
SuperFamilySSF1019413.92E-233145IPR003441NAC domain
PfamPF023657.3E-163131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDPTGFRFHP TDQELIGHYL FIKNNSDPVP ETGSYLREFD MYGEVEPWTI WEAYGGPLLD  60
DQDLFFFTRL KKHGHRINRR IGSGTWSQGE PFKSVYAKNN QETPIGKKTK LRYENKNVTE  120
QSGCWFMDEY STVDYDGDYV ICRLRENPGK RPSPPPSSKP SDNKRKCQAE SRPSKKTKSL  180
RVSDPQPTII TNEAGKTVSL NQRPNPEKQF DQSLRLPVPD SQAMFLEGTT AAGHIDCAFD  240
TVEMFHHDQE YETQHFLLEG NTAGHSDYAL VEVQRDALSP AAVSEQQHTC ASSFAEPNLT  300
DDVFVSENER GNEQLEDTDC LGVALGVVEG DTLFSALSEQ QTSLMSQMQD IPSQENIIES  360
HIQSPYVPHL GSEYQQQADT NEEEFGLAYD DDFSNLPMDP AYINSDEFNN YIFGDEFLSG  420
GDDIGTADIV QGYSSFSALL EDQNHEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12133.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465735.10.0PREDICTED: NAC transcription factor ONAC010-like
TrEMBLA0A2P6PGY93e-76A0A2P6PGY9_ROSCH; Putative transcription factor NAM family
STRINGXP_004309935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2193324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.18e-16NAC-domain protein 101