PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12030.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 341aa    MW: 38514.2 Da    PI: 6.605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12030.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13126177155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  mrna12030.1-v1.0-hybrid 126 QRMTHIVVERNRRKQMNEYLAVLRSLMPTS---YVQRGDQASIIGGAINFVKELE 177
                              79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.03E-13124181No hitNo description
SuperFamilySSF474597.85E-17124196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-14126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALEAVVYPK DYNPFSYVSK DFYSLANWGY DFSLQEDPQD KALVGLLDHQ NNNIQHHQQG  60
GLDENWDYNC SSSAPSFLHN VKEWDPPHSS PEALETPPPP PPQATTGRRK RRRTRSSKNK  120
EEMENQRMTH IVVERNRRKQ MNEYLAVLRS LMPTSYVQRG DQASIIGGAI NFVKELEQLL  180
QSMDGSHKRT SKPEQVPLAE FFTYPQFSTY ATTQCIRNSS SSSSSSSGCI QVNDEPSMAP  240
RSNNNNDNQW PAADIEVTMV DSHANLKILS KKRPRQLLKM VAGFQSLRLT VLHLNVTTVD  300
EMVLYSVSVK MEEGCMLNTV DEIAAAVNEM LRRIQEASIS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIVVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12030.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299687.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-92BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2P6PHD20.0A0A2P6PHD2_ROSCH; Putative transcription factor bHLH family
STRINGXP_004299687.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]