PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12030.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 38514.2 Da PI: 6.605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 4.1e-13 | 126 | 177 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ mrna12030.1-v1.0-hybrid 126 QRMTHIVVERNRRKQMNEYLAVLRSLMPTS---YVQRGDQASIIGGAINFVKELE 177 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.03E-13 | 124 | 181 | No hit | No description |
SuperFamily | SSF47459 | 7.85E-17 | 124 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.358 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-14 | 126 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MALEAVVYPK DYNPFSYVSK DFYSLANWGY DFSLQEDPQD KALVGLLDHQ NNNIQHHQQG 60 GLDENWDYNC SSSAPSFLHN VKEWDPPHSS PEALETPPPP PPQATTGRRK RRRTRSSKNK 120 EEMENQRMTH IVVERNRRKQ MNEYLAVLRS LMPTSYVQRG DQASIIGGAI NFVKELEQLL 180 QSMDGSHKRT SKPEQVPLAE FFTYPQFSTY ATTQCIRNSS SSSSSSSGCI QVNDEPSMAP 240 RSNNNNDNQW PAADIEVTMV DSHANLKILS KKRPRQLLKM VAGFQSLRLT VLHLNVTTVD 300 EMVLYSVSVK MEEGCMLNTV DEIAAAVNEM LRRIQEASIS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 112 | RKRRR |
2 | 108 | 113 | RKRRRT |
3 | 126 | 137 | RMTHIVVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12030.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299687.1 | 0.0 | PREDICTED: transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 3e-92 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2P6PHD2 | 0.0 | A0A2P6PHD2_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004299687.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12030.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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