PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12000.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27532.8 Da PI: 8.5781 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.9 | 1.2e-20 | 19 | 97 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s + +p+ f+++++g+ +le ++g+ W+vkl + k + +++ kGWk+Fvk+n L+egDf+vF +dg+s+f +v+++++ mrna12000.1-v1.0-hybrid 19 SEKMKIPRAFVNHFNGP----ALCQLEGPNGNCWDVKL--EEKNNDFFFHKGWKKFVKDNFLDEGDFLVFNYDGNSCF--KVTIYDE 97 4569*******777766....3579*************..99999*********************************..8888775 PP | |||||||
2 | B3 | 40.9 | 3.8e-13 | 145 | 226 | 11 | 98 |
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ +lv+p + a++ + + + l l+d+++r W v++ +gr + kGW++ +kan++k+g ++v+++++ + + ++ mrna12000.1-v1.0-hybrid 145 HRLYQLVIPITIARAKldM----GRQILELRDPKNRPWPVTV-APMEDGRLLVNKGWRDCCKANQVKVGHTIVLEFVK-KHG--KL 222 455679*******887532....3348***************.5667778*************************988.666..45 PP EEE- CS B3 95 kvfr 98 ++fr mrna12000.1-v1.0-hybrid 223 HIFR 226 6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-23 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.395 | 7 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.77E-21 | 8 | 96 | No hit | No description |
SuperFamily | SSF101936 | 6.87E-24 | 8 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-16 | 10 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-18 | 19 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.26E-15 | 131 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-14 | 132 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.461 | 135 | 230 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.02E-10 | 136 | 226 | No hit | No description |
SMART | SM01019 | 2.4E-7 | 138 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-11 | 143 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASSVPAPAF FTVLVGGFSE KMKIPRAFVN HFNGPALCQL EGPNGNCWDV KLEEKNNDFF 60 FHKGWKKFVK DNFLDEGDFL VFNYDGNSCF KVTIYDESAC EMDIEAAKTK RSGGAQRRDD 120 VPPGESRIIE FKSKHFCFKR TMERHRLYQL VIPITIARAK LDMGRQILEL RDPKNRPWPV 180 TVAPMEDGRL LVNKGWRDCC KANQVKVGHT IVLEFVKKHG KLHIFRDEGC DVILSGPHVV 240 D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12000.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305410.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Refseq | XP_011466851.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Refseq | XP_011466852.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Refseq | XP_011466853.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Refseq | XP_011466854.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Refseq | XP_011466855.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like | ||||
TrEMBL | A0A2P6S8F2 | 1e-127 | A0A2P6S8F2_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004305410.1 | 1e-180 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 5e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna12000.1-v1.0-hybrid |