PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11882.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 255aa    MW: 27529.1 Da    PI: 4.684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11882.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-1859109155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  mrna11882.1-v1.0-hybrid  59 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 109
                              68*****998.**********854...59*********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1259109IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2160118IPR016177DNA-binding domain
PROSITE profilePS5103222.98560117IPR001471AP2/ERF domain
SMARTSM003807.9E-3660123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3160118IPR001471AP2/ERF domain
CDDcd000186.98E-3061117No hitNo description
PRINTSPR003674.9E-106172IPR001471AP2/ERF domain
PRINTSPR003674.9E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTKDPTRSDT TTESTSFNSS SFSSSPCSGR NGDPLPGGSD PSGNRVGSKR ARESSSKHPV  60
YRGVRMRAWG KWVSEIREPR KKNRIWLGTF STPEMAARAH DVAALTIKGN SAILNFPTLS  120
GSLPRPDSNS PRDIQAAAAK AASMENLDPP PPQPQPPSSA LSQSSSSSSS LEVTDAGTPE  180
ELGEIVELPR LGTSYESAES GSDFVFEDSV EGWLYPPAQP WWQNGEFGED YGYSRNFNEM  240
LMAEGGVEDL LWQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1852117672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11882.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287458.10.0PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD39e-63DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3S8T9031e-137A0A3S8T903_FRAAN; Transcription factor ERF26
STRINGXP_004287458.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]