PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11847.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 372aa    MW: 40254.9 Da    PI: 6.9853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11847.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00052302681255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  mrna11847.1-v1.0-hybrid 230 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 268
                              6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-10228279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-6228272No hitNo description
Gene3DG3DSA:4.10.280.101.5E-7232274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAAGNPNWWN INSMRAPITT NQPSSSPFLP PPHHPSFLIP QFQPTHSSSS SLPFIPSWHD  60
TNNQNQELPE SWSQLLMGGL VSEHDKANGL RQLIHQAKKL EDWEEHILSS QAHPNAPVNV  120
DVKQENSPPG SFLYGHHGTG NNSEDFQSSA LCSLSQIMPT SSTAASASSP KSSCVTSFGS  180
NMLDFSNKSE ARHPPPSRSS SECNSSATGG AVKKARVQPP SSAQPTFKVR KEKLGDRITA  240
LHQLVSPFGK TDTASVLLEA IGYIRFLQNQ IEALSLPYLG SGSPNMRLQQ QQQSAVHGER  300
NCMFPEDPGQ LLNDNCMKMK GVNSEQDAYQ EPKKDLRSRG LCLVPVSCTL QVGSDNGADY  360
WAPAALGGGF Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11847.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450103e-77BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464892.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D15e-88BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2P6RJP90.0A0A2P6RJP9_ROSCH; Putative transcription factor bHLH family
STRINGXP_004299993.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]