PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11847.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 40254.9 Da PI: 6.9853 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.0005 | 230 | 268 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq mrna11847.1-v1.0-hybrid 230 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 268 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.668 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-10 | 228 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-6 | 228 | 272 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 232 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MAAGNPNWWN INSMRAPITT NQPSSSPFLP PPHHPSFLIP QFQPTHSSSS SLPFIPSWHD 60 TNNQNQELPE SWSQLLMGGL VSEHDKANGL RQLIHQAKKL EDWEEHILSS QAHPNAPVNV 120 DVKQENSPPG SFLYGHHGTG NNSEDFQSSA LCSLSQIMPT SSTAASASSP KSSCVTSFGS 180 NMLDFSNKSE ARHPPPSRSS SECNSSATGG AVKKARVQPP SSAQPTFKVR KEKLGDRITA 240 LHQLVSPFGK TDTASVLLEA IGYIRFLQNQ IEALSLPYLG SGSPNMRLQQ QQQSAVHGER 300 NCMFPEDPGQ LLNDNCMKMK GVNSEQDAYQ EPKKDLRSRG LCLVPVSCTL QVGSDNGADY 360 WAPAALGGGF Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11847.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145010 | 3e-77 | BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464892.1 | 0.0 | PREDICTED: transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 5e-88 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2P6RJP9 | 0.0 | A0A2P6RJP9_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004299993.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11847.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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