PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11837.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 278aa    MW: 29886.4 Da    PI: 6.6432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11837.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.61.3e-13196254462
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN  L+ e  e kke  k  +e
  mrna11837.1-v1.0-hybrid 196 QQKQRRMIKNRESAARSRERKQAYTNELEALVTKLEEENALLIMEEAERKKERLKKLME 254
                              689*************************************9997777667766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-12190255No hitNo description
SMARTSM003383.2E-9193255IPR004827Basic-leucine zipper domain
PfamPF001706.5E-12195255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737195247IPR004827Basic-leucine zipper domain
CDDcd147072.21E-18197237No hitNo description
SuperFamilySSF579591.81E-9198242No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASSKLVSVS TANSDLPRDS SICSLSTLIA DVDKHHHITM DDLLKNIYND QPHPSPPPPD  60
AGGASASAAA PGRTVEEVWK EIVAGGGGEG EDASADGEAD HVRTGADGGG GGLAEMTLED  120
FLTRAGAVRE EDVGVGPGTV VPMGYGQYQV QPPPPPPPRP HGQLVYANNN GTTSGGGGRG  180
TKRRAVQEAP LDKATQQKQR RMIKNRESAA RSRERKQAYT NELEALVTKL EEENALLIME  240
EAERKKERLK KLMENLIPIE EKRRPARVLR RVQSVHW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11837.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301547.10.0PREDICTED: G-box-binding factor 4-like
RefseqXP_011464887.10.0PREDICTED: G-box-binding factor 4-like
TrEMBLA0A2P6PDV61e-112A0A2P6PDV6_ROSCH; Putative transcription factor bZIP family
STRINGXP_004301547.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-23bZIP family protein