PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11780.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 322aa    MW: 36517.3 Da    PI: 4.6801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11780.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.6e-15241596128
                      NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiyk...vePwdLpk...kvka.eekewyfFskrdkkyatgkrknr.atksgy 82 
                               F+Ptd +lv +yL ++++  +  +  ++++++diy    +ePw        ++  +++  yfF++ +k +++gkr  r + + g+
  mrna11780.1-v1.0-hybrid  24 TFNPTDAQLVGHYLYNQTTLGHgGNGMQAFPDLDIYGesgMEPWAVWDslePIRIpHQDFSYFFARVKKLSSKGKRLCRrVGSGGT 109
                              5**************99776665444578999999953337****9532443333234456***************9995777999 PP

                      NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapk...gektdWvmheyrl 128
                              W++t   k+v++   +++ g  + L + ++++++    ++  W+m+ey++
  mrna11780.1-v1.0-hybrid 110 WSETEPGKDVFVDaVQQAYGKLRKLRYENKDEESfgyQHHGAWLMEEYTI 159
                              ******999999745666888899999965444322245889******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.39319175IPR003441NAC domain
SuperFamilySSF1019412.22E-1420170IPR003441NAC domain
PfamPF023653.1E-1124159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MASSSSRSSG LIRLEELQWG VVKTFNPTDA QLVGHYLYNQ TTLGHGGNGM QAFPDLDIYG  60
ESGMEPWAVW DSLEPIRIPH QDFSYFFARV KKLSSKGKRL CRRVGSGGTW SETEPGKDVF  120
VDAVQQAYGK LRKLRYENKD EESFGYQHHG AWLMEEYTIN HLPDLALYRL KVNGKGGHHN  180
QRNKRKTISD ETPSSSKKQI LELKRDQQPP QCDDHDYSVD QNLVLSPTGF GLDDDDDQFT  240
ANLDQWNEEL LHQIITTVPQ QQVVEPNSSN CEQLQQQGEQ QLLPSPSPSL GGDDSQDTLY  300
IQSDEFNAFE QDLYQYSILL Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11780.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024172310.13e-80uncharacterized protein LOC112178387
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.17e-07NAC domain containing protein 20