PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11774.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 566aa MW: 62783.6 Da PI: 4.9891 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.3e-30 | 281 | 340 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ mrna11774.1-v1.0-hybrid 281 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 340 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 266 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-27 | 274 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.161 | 276 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 281 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-27 | 282 | 340 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MGISRENDQK ADLEIGLSLK IDHPSKSEQE EEDDDNHDED ENIQEASASL AAADEEEEEE 60 EEEEEEEEEE EIKQDDIEEE QKAAAGEVDD DASIVLESLH ENNMKTDQEL YALQMEMSRM 120 KEENKVLRKV VEQTKKDYYD LQMKFTAVHQ NSQTNKDPHT FLSLHGNDHE EADPPKSSIP 180 KTLDLRRHRS PSPPAREADD IIRESQLGLS LRLQTNEFRD QREDHDDIQE RNKEELTSSS 240 LTSSVQHKLQ RTDLAGITSH AAQANRKARV SVRARCESAT MNDGCQWRKY GQKIAKGNPC 300 PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TASAAAASFM 360 LLDSSNHHLS DGTLPSSNFM TQSSLPSNNY YNTPHPMLNN QYPSSISHQF SSPSNFRTLS 420 SLHHQPHHHD PSKGIVLDLT NNFADTSTST TAMASAGSSS HSSAPPGFNN WMSSKPAKYN 480 AGNSTTMMMG NHHLLGNSRR TPGEENNMTS SSSALMAENV SAIASDPKFR VAVAAAITSL 540 INSKENNTTH YPTPNNHNNF GPKQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 268 | 344 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11774.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299966.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 isoform X1 | ||||
TrEMBL | A0A2P6PDJ3 | 0.0 | A0A2P6PDJ3_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004299966.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 8e-70 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | mrna11774.1-v1.0-hybrid |