PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11774.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 566aa    MW: 62783.6 Da    PI: 4.9891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11774.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30281340159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  mrna11774.1-v1.0-hybrid 281 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 340
                              58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32266342IPR003657WRKY domain
SuperFamilySSF1182901.16E-27274342IPR003657WRKY domain
PROSITE profilePS5081129.161276342IPR003657WRKY domain
SMARTSM007743.2E-37281341IPR003657WRKY domain
PfamPF031064.6E-27282340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGISRENDQK ADLEIGLSLK IDHPSKSEQE EEDDDNHDED ENIQEASASL AAADEEEEEE  60
EEEEEEEEEE EIKQDDIEEE QKAAAGEVDD DASIVLESLH ENNMKTDQEL YALQMEMSRM  120
KEENKVLRKV VEQTKKDYYD LQMKFTAVHQ NSQTNKDPHT FLSLHGNDHE EADPPKSSIP  180
KTLDLRRHRS PSPPAREADD IIRESQLGLS LRLQTNEFRD QREDHDDIQE RNKEELTSSS  240
LTSSVQHKLQ RTDLAGITSH AAQANRKARV SVRARCESAT MNDGCQWRKY GQKIAKGNPC  300
PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TASAAAASFM  360
LLDSSNHHLS DGTLPSSNFM TQSSLPSNNY YNTPHPMLNN QYPSSISHQF SSPSNFRTLS  420
SLHHQPHHHD PSKGIVLDLT NNFADTSTST TAMASAGSSS HSSAPPGFNN WMSSKPAKYN  480
AGNSTTMMMG NHHLLGNSRR TPGEENNMTS SSSALMAENV SAIASDPKFR VAVAAAITSL  540
INSKENNTTH YPTPNNHNNF GPKQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21268344176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11774.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299966.10.0PREDICTED: probable WRKY transcription factor 9 isoform X1
TrEMBLA0A2P6PDJ30.0A0A2P6PDJ3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004299966.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-70WRKY DNA-binding protein 9