PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11682.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CPP

Protein Properties

Length: 945aa MW: 103528 Da PI: 7.0849

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11682.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.4	1.6e-14	519	557	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cf+ag +C+ +C C++C+Nk e mrna11682.1-v1.0-hybrid 519 CKRCNCKKTKCLKLYCDCFSAGIYCDTTCACQECFNKPE 557 79**********************************976 PP
2	TCR	48.6	1.6e-15	596	634	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+C+N mrna11682.1-v1.0-hybrid 596 RHKRGCNCKKSMCLKKYCECYQANVGCSNGCRCEGCQNA 634 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.7E-13	517	558	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.871	518	636	IPR005172	CRC domain
Pfam	PF03638	1.0E-10	520	555	IPR005172	CRC domain
SMART	SM01114	7.0E-17	596	637	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.8E-11	598	634	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MDSPDFTKSR PTASPSSHSP PVHESPVFSY INNLSPIKTV KATHIAPGFP GLSSPPLVFT 60 SPRVNPYSET SFLKRSEKSA ILIRRSQQSE LSGAGIPKPH DKGPVDSVKP LTQLPLGFIT 120 DTRDCKTKNC VETHQCSSSE FVDEFLADSA DVDCVTSDRS LNPCLEHSSS VLEQSGNDLI 180 KSNELTLTLG NRNDDATNST TEPQAPFMIS EQAHEYIQGK QTSIAKSTRN EKQRNDELSF 240 NEYRNIDTGL SVNNAFRREY HQDLHDRVLR GEHQDDYGYS PQSLAGALHI GHVYEEDEAG 300 SIPNRLVENA VMHASKRRCL RFEEAPHTSG KADGSLSFSE KVSNSEPPTS TIETEMVGSS 360 FVDLSATCTK RHMEASLPPR STGKPSLSVS KPSGIGLHLN SIVNAASLVH GATTIKLADR 420 NMGVQVMKSA SISVRRCPNL LNMVEKDSAG AVDWRNETES SVAASSATTQ SPHSMEFEHH 480 GSIHEIRISD SHSIDSYEEC NQLSSNKKRK RAPRNSDGCK RCNCKKTKCL KLYCDCFSAG 540 IYCDTTCACQ ECFNKPEYED TVLETRQIIE SRNPLAFAPK VVEREDENQF TPASARHKRG 600 CNCKKSMCLK KYCECYQANV GCSNGCRCEG CQNAYGKRGE FVDVDSGVAG EVISHKDGTE 660 TRESTFDEKL QRVATRKDSN DSPNFTPFTP SLQCFDDNYN ITKSKVLPAI GRPSPQSTLT 720 IISHYEKSTR SPQRNSENSD NCMDTSKILL DVTSYDRQED YENIGTLETT SPRCYAVPTT 780 CHLTPLSGPG SLAITSSASS TTSDLRNASQ VQLHPGSHCI LSGSSLHWRS SPVTPMHQLG 840 GLKSFQGFDS EKGHHDVLQD DTPQILKDTS IPIKSVKVSS PNKKRVSPPH SHIHELGTSS 900 SGALRSGRKF ILRAVPSFPP LTPCIGSKGS STIQNMGNPL QDKD*

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MDSPDFTKSR PTASPSSHSP PVHESPVFSY INNLSPIKTV KATHIAPGFP GLSSPPLVFT  60
SPRVNPYSET SFLKRSEKSA ILIRRSQQSE LSGAGIPKPH DKGPVDSVKP LTQLPLGFIT  120
DTRDCKTKNC VETHQCSSSE FVDEFLADSA DVDCVTSDRS LNPCLEHSSS VLEQSGNDLI  180
KSNELTLTLG NRNDDATNST TEPQAPFMIS EQAHEYIQGK QTSIAKSTRN EKQRNDELSF  240
NEYRNIDTGL SVNNAFRREY HQDLHDRVLR GEHQDDYGYS PQSLAGALHI GHVYEEDEAG  300
SIPNRLVENA VMHASKRRCL RFEEAPHTSG KADGSLSFSE KVSNSEPPTS TIETEMVGSS  360
FVDLSATCTK RHMEASLPPR STGKPSLSVS KPSGIGLHLN SIVNAASLVH GATTIKLADR  420
NMGVQVMKSA SISVRRCPNL LNMVEKDSAG AVDWRNETES SVAASSATTQ SPHSMEFEHH  480
GSIHEIRISD SHSIDSYEEC NQLSSNKKRK RAPRNSDGCK RCNCKKTKCL KLYCDCFSAG  540
IYCDTTCACQ ECFNKPEYED TVLETRQIIE SRNPLAFAPK VVEREDENQF TPASARHKRG  600
CNCKKSMCLK KYCECYQANV GCSNGCRCEG CQNAYGKRGE FVDVDSGVAG EVISHKDGTE  660
TRESTFDEKL QRVATRKDSN DSPNFTPFTP SLQCFDDNYN ITKSKVLPAI GRPSPQSTLT  720
IISHYEKSTR SPQRNSENSD NCMDTSKILL DVTSYDRQED YENIGTLETT SPRCYAVPTT  780
CHLTPLSGPG SLAITSSASS TTSDLRNASQ VQLHPGSHCI LSGSSLHWRS SPVTPMHQLG  840
GLKSFQGFDS EKGHHDVLQD DTPQILKDTS IPIKSVKVSS PNKKRVSPPH SHIHELGTSS  900
SGALRSGRKF ILRAVPSFPP LTPCIGSKGS STIQNMGNPL QDKD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	520	633	12	120	Protein lin-54 homolog
5fd3_B	1e-17	520	633	12	120	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11682.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010165	2e-31	AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459206.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A2P6PY00	0.0	A0A2P6PY00_ROSCH; Putative transcription factor Tesmin family
STRING	XP_008229954.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-56	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	mrna11682.1-v1.0-hybrid