PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11656.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 172aa    MW: 19465 Da    PI: 8.1496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11656.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-1373163799
                              .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              +s++ ++  l +  +f+ ++  +   + s+ + l+ ++g +W  k+++++++++    + +GW +F+++n+L+ gD++v+ l++  
  mrna11656.1-v1.0-hybrid  73 HSSYIANP-LNIQESFVHQYvfQ--GHLSRSVNLQIPNGGTWCAKCTVSRCGEHdyARIHGGWTKFARDNDLQGGDVIVIDLIQ-- 153
                              56666665.99999***999654..458889***************88777777878999*********************998.. PP

                              EE..EEEEE-S CS
                       B3  89 efelvvkvfrk 99 
                               +++ v+++r+
  mrna11656.1-v1.0-hybrid 154 -QQPEVHIYRS 163
                              .4567888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1261154IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1461163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.55966164IPR003340B3 DNA binding domain
SMARTSM010190.001867164IPR003340B3 DNA binding domain
PfamPF023621.6E-1069163IPR003340B3 DNA binding domain
CDDcd100175.90E-1281162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVSLENGCIL VFGYKGIHSC FNVRVLEKNG LEVDYPSKSS HHNKADFCRA YDEAFSRTSR  60
FHSDRPFLAL KLHSSYIANP LNIQESFVHQ YVFQGHLSRS VNLQIPNGGT WCAKCTVSRC  120
GEHDYARIHG GWTKFARDND LQGGDVIVID LIQQQPEVHI YRSQISKMYV G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11656.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459191.16e-88PREDICTED: uncharacterized protein LOC105349895
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369