PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11656.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19465 Da PI: 8.1496 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.3 | 2.8e-13 | 73 | 163 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 +s++ ++ l + +f+ ++ + + s+ + l+ ++g +W k+++++++++ + +GW +F+++n+L+ gD++v+ l++ mrna11656.1-v1.0-hybrid 73 HSSYIANP-LNIQESFVHQYvfQ--GHLSRSVNLQIPNGGTWCAKCTVSRCGEHdyARIHGGWTKFARDNDLQGGDVIVIDLIQ-- 153 56666665.99999***999654..458889***************88777777878999*********************998.. PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++ v+++r+ mrna11656.1-v1.0-hybrid 154 -QQPEVHIYRS 163 .4567888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-12 | 61 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 61 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.559 | 66 | 164 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0018 | 67 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 69 | 163 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.90E-12 | 81 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVSLENGCIL VFGYKGIHSC FNVRVLEKNG LEVDYPSKSS HHNKADFCRA YDEAFSRTSR 60 FHSDRPFLAL KLHSSYIANP LNIQESFVHQ YVFQGHLSRS VNLQIPNGGT WCAKCTVSRC 120 GEHDYARIHG GWTKFARDND LQGGDVIVID LIQQQPEVHI YRSQISKMYV G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11656.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459191.1 | 6e-88 | PREDICTED: uncharacterized protein LOC105349895 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Link Out ? help Back to Top | |
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Phytozome | mrna11656.1-v1.0-hybrid |