PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11636.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 233aa    MW: 25766.5 Da    PI: 6.3992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11636.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-17654254
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                             +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a   ++
  mrna11636.1-v1.0-hybrid  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQASILMN 54
                             89****999.**********8.....334********************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31564IPR001471AP2/ERF domain
CDDcd000181.71E-31665No hitNo description
PfamPF008471.3E-10654IPR001471AP2/ERF domain
SMARTSM003802.0E-38669IPR001471AP2/ERF domain
PROSITE profilePS5103221.707663IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-19664IPR016177DNA-binding domain
PRINTSPR003673.9E-10718IPR001471AP2/ERF domain
PRINTSPR003673.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAS ILMNGQNAKT  60
NFPNNNPPSD DQETKAADHL PHGHQLPWDP KELAELLSSK LKKCCKDPSP SLTCLRLDND  120
NSHIGVWQKR PAGSRASSNW VMRIELGKKK KQCNGTVTEH EDGSKSTSSS SSSSLISQSS  180
AGSNTNEAGI AIEEADEDHG EEDELAMQMI EELLNWNSYP IPSPTSNVQE GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-156641473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11636.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8425951e-136HQ842595.1 Rosa chinensis clone 1 putative DREB protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459181.11e-173PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9583e-69SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A2P6PXT61e-152A0A2P6PXT6_ROSCH; Putative transcription factor AP2-EREBP family
STRINGXP_004292988.11e-147(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-56ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]