PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11611.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 387aa MW: 44777.7 Da PI: 7.0457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11611.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.6e-23	54	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ + el+Hn mrna11611.1-v1.0-hybrid 54 DFYNLYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSDAN-----NPRPETRTGCPAMIVIKLVDSQRWRIVESELQHN 134 6*******************999**************9988.....9******************************* PP FAR1 87 Hela 90 H+++ mrna11611.1-v1.0-hybrid 135 HQVS 138 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-21	54	139	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.396	266	302	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-4	274	299	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	277	304	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDL EGGHDAGNGE TQCKQVSPQP TVGLEFDSFD EAYDFYNLYG 60 KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSDAN NPRPETRTGC PAMIVIKLVD 120 SQRWRIVESE LQHNHQVSPQ IKRFYKSHKK MIIAAKNAQP QPDPVTEVHT IKLYRTSVMD 180 VGKRMKEVVA DQESRTSSFE LKTRCNFEVQ LCKVYTKEIF RRFQLEVEGM YSCFNTRQVN 240 VNGPIITYIV KERVEVEGNE KEVRCYEVLY ETTQVDIRCI CSLFNYKGYL CRHALNVLNY 300 NGVEVIPSRY ILPRWSKNFK CTHLLHQGSS SNDVYDPAYW CDHLYKLALP VAEEGAQSEE 360 HYKTTLQALE KLLNKFHLVE DTLNET*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDL EGGHDAGNGE TQCKQVSPQP TVGLEFDSFD EAYDFYNLYG  60
KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKKSDAN NPRPETRTGC PAMIVIKLVD  120
SQRWRIVESE LQHNHQVSPQ IKRFYKSHKK MIIAAKNAQP QPDPVTEVHT IKLYRTSVMD  180
VGKRMKEVVA DQESRTSSFE LKTRCNFEVQ LCKVYTKEIF RRFQLEVEGM YSCFNTRQVN  240
VNGPIITYIV KERVEVEGNE KEVRCYEVLY ETTQVDIRCI CSLFNYKGYL CRHALNVLNY  300
NGVEVIPSRY ILPRWSKNFK CTHLLHQGSS SNDVYDPAYW CDHLYKLALP VAEEGAQSEE  360
HYKTTLQALE KLLNKFHLVE DTLNET*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11611.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292980.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_011459168.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	9e-63	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0B0MXF2	0.0	A0A0B0MXF2_GOSAR; Far1-related sequence 6-like protein
STRING	XP_004292980.1	1e-141	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	4e-65	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	mrna11611.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]