PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11523.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 307aa MW: 34395 Da PI: 4.5615

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11523.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.4e-10	177	289	2	72
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........................................ 47 fY++Y+ +GFs rk+k k+ g +++r++vCskeg+r+++ mrna11523.1-v1.0-hybrid 177 FYSFYSLAMGFSFRKEKLDKN-IYGIVVRRQLVCSKEGTRKKNGPPkdnpvshnlgsrtsfmksvgipekgkqrnsqdmqaeeegg 261 9***************999.8899**********9987767899*****************999999999999998 PP FAR1 48 ...tekerrtraetrtgCkaklkvkkek 72 ++k +++ etr +C a+l+vk+ + mrna11523.1-v1.0-hybrid 262 npnKRKCPHSHRETRGDCLARLTVKRCN 289 76555556699999999**9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-7	177	289	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MKILGELKLN CGDGDVEDVD QDDKAVDDAE AALNVDDGLA PGGGEWIVDE GGDGVSGGVI 60 GDGRRGREHH LVVRIFWPQD STATIQLYFV NYSISKVVGF MDDNGLRFSE SNYYDSVENE 120 EVQSEEEDLE DEPEETLVSN SVDTQNCLHY KGKRYEDLRY EDLKEVDFES VEEVDTFYSF 180 YSLAMGFSFR KEKLDKNIYG IVVRRQLVCS KEGTRKKNGP PKDNPVSHNL GSRTSFMKSV 240 GIPEKGKQRN SQDMQAEEEG GNPNKRKCPH SHRETRGDCL ARLTVKRCNK TGLALGNPVQ 300 MITFRE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	287	TVKRC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11523.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19973	2	5

Link Out ? help Back to Top
Phytozome	mrna11523.1-v1.0-hybrid