PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11441.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 158aa    MW: 17515.2 Da    PI: 7.6665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11441.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-201869256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr+++ +g++++eIrdps +g  +r +lg+f+taeeAa+a+++a+  l+g+
  mrna11441.1-v1.0-hybrid 18 RYRGVRRRP-WGKFASEIRDPSRQG--ARLWLGTFDTAEEAARAYDKAAFDLRGH 69
                             6********.**********96543..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.30E-291877No hitNo description
PROSITE profilePS5103224.8161876IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-231877IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-321878IPR001471AP2/ERF domain
SMARTSM003807.5E-371882IPR001471AP2/ERF domain
PfamPF008473.7E-141869IPR001471AP2/ERF domain
PRINTSPR003679.7E-121930IPR001471AP2/ERF domain
PRINTSPR003679.7E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEDSRRGKEE KPGKEEVRYR GVRRRPWGKF ASEIRDPSRQ GARLWLGTFD TAEEAARAYD  60
KAAFDLRGHL AILNFPNEYY SRLMGSPPYP PRFQSSFSSS SSSSSASAAA TGSSAAAGSF  120
ESGSSSTAGQ GRQVFEFEYL DDKVLEDLLD WEKEKHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-32131449114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11441.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462261.11e-110PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-47ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q8TB391e-88A0A3Q8TB39_FRAAN; Transcription factor ERF84
STRINGEMJ254694e-66(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-37ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]