PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11440.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15147.8 Da PI: 8.4393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.6e-20 | 22 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g mrna11440.1-v1.0-hybrid 22 RYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYAMRG 72 6********.**********4...3234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.709 | 22 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.01E-17 | 22 | 81 | No hit | No description |
Pfam | PF00847 | 1.8E-15 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 22 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 22 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 22 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MAEDRRGGKV QTGEGKDAGE VRYRGVRRRP WGKFAAEIRD SNRHGQRVWL GTFNTAEEAA 60 RAYDRAAYAM RGGLAILNFP NEYPSGTTVG SSSSSSSAFS SSSSSMQAGN QVLELEYLDD 120 RLLEELLDCE EMKSKKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-40 | 11 | 122 | 3 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11440.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297818.1 | 5e-97 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 3e-41 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3Q8TD05 | 6e-95 | A0A3Q8TD05_FRAAN; Transcription factor ERF83 | ||||
STRING | XP_004297818.1 | 2e-96 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 6e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11440.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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