PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11436.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25855.3 Da PI: 6.3711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.3e-09 | 77 | 124 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a+ rE+ RR+r+N++f L +l + + K +K +iL A++ + +L mrna11436.1-v1.0-hybrid 77 AKACREKLRRERLNDKFLDLSAVLEPG---RPAKTDKPAILDDAIRVLTQL 124 6778**********************8...89**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.871 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-7 | 77 | 129 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-12 | 79 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-10 | 79 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDAMEGIEDF FGYNSLIDET QFPNFLWSNP NPTPSFHEIE FSANSGVAAS AAPSSQTQEK 60 ECSRKRGRTE SWCGSGAKAC REKLRRERLN DKFLDLSAVL EPGRPAKTDK PAILDDAIRV 120 LTQLRAEAQE LTQTNEKLLE EIKSLKAEKS ELREEKVVLK ADKERLEQQL KAMTIPPSGF 180 MPAHPAVPAA YHPGASKMAV YPSYGMIPMW HYLPPSTRDT SRDHELRPPA A* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11436.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ830737 | 6e-50 | DQ830737.1 Fragaria vesca clone 0-3R T-DNA insertion flanking sequence. | |||
GenBank | HQ184974 | 6e-50 | HQ184974.1 Fragaria vesca clone VT_A03_R T-DNA insertion flanking sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004296358.1 | 1e-172 | PREDICTED: transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 5e-83 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2P6QQR3 | 1e-150 | A0A2P6QQR3_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004296358.1 | 1e-172 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-81 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11436.1-v1.0-hybrid |