PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11429.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HB-other | ||||||||
Protein Properties | Length: 1526aa MW: 174486 Da PI: 5.5344 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.6 | 2.8e-05 | 839 | 897 | 6 | 52 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 ft++++ Le+ F++ ++ +++ + LA ++t++qV WFq rR mrna11429.1-v1.0-hybrid 839 VFTHSEIMKLENIFKEtpQQALTQGFFQNLAIDFscqpsrlgksDITQQQVEGWFQSRR 897 69*************978999************999**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00862 | 5.1E-259 | 11 | 545 | IPR000368 | Sucrose synthase |
TIGRFAMs | TIGR02470 | 0 | 26 | 792 | IPR012820 | Sucrose synthase, plant/cyanobacteria |
CDD | cd03800 | 1.22E-125 | 270 | 754 | No hit | No description |
SuperFamily | SSF53756 | 2.98E-50 | 286 | 754 | No hit | No description |
Gene3D | G3DSA:3.40.50.2000 | 3.1E-17 | 549 | 737 | No hit | No description |
Pfam | PF00534 | 5.5E-31 | 558 | 730 | IPR001296 | Glycosyl transferase, family 1 |
Gene3D | G3DSA:1.10.10.60 | 6.8E-4 | 813 | 898 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.977 | 831 | 903 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 1.3E-38 | 945 | 1063 | IPR032001 | SAWADEE domain |
Pfam | PF03208 | 1.9E-35 | 1195 | 1330 | IPR004895 | Prenylated rab acceptor PRA1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005985 | Biological Process | sucrose metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0016157 | Molecular Function | sucrose synthase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1526 aa Download sequence Send to blast |
MADPSSCAHC SIYERLDWTM SDHRVEILAV LSKLESNGKG FVQPQQLVAV FQAIPEAFGE 60 VSKNIQEALV LSPYLALAIR PRPGVWEHIR INMKTLDVEE LLVDEYLMMK EELVDGSAKG 120 DFVLELDFEP FNASVPKPIL SKSIGNGVEF LNRHISAKLF TEPESMQPEL LEFLRIHTHD 180 GKNLMLNDNI EDVESLQHVL MEVEEYLLTL SPETAYEAFE QKLQDLGLER GWGSNAGRVL 240 ETIQLLLELL EAPDACNLEK FLSKIPLVFN VVIMSPHGYF AQDNVLGYPD TGGQVVYILD 300 QVRALENEML KRIKEQGLDI TPRILIVTRL LPDAVGTTCG QRLEKVYGTQ YSDIIRVPFR 360 TEKGIVRRWI SRFEVWPYLE AYTEDVATEL LKEFQGKPDL IVGNYSDGNI VASLLAHKFD 420 VTQCTIAHAL EKTKYPDSDL YWKKLEDKYH FSCQFTADLI AMNQTDFIIT STFQEIAGNK 480 ETVGQYESHL AFTMPGLYRV VSGIDCFDPK FNIVSPGADM DIYFPYTEKE RRLTSFHSEI 540 EELLYNQVEN KEHLCVLNDK NKPIIFTMAR LDRVKNITGL VEWYGKNAKL RELVNLVVVA 600 GDRRKESKDN EEKAEMKKMY ELIDTYKLNG QFRWISSQMN RVRNGELYRY IADTKGAFVQ 660 PAVYEAFGLT VVEAMTCGLP TFATCKGGPA EIIVNGKSGY HIDPYNGDKA ADILVDFFEK 720 CKADPSHWDK ISQGGLKRIE EKYTWQIYSE RLLTLTGVYG FWKQVSDLDE KRRYIEMLYA 780 LRYKKSVESV PLAEEDFRIE IGVSLTLSLS PVMKDSNLVY NRRQSETKEE RKPMDSLSVF 840 THSEIMKLEN IFKETPQQAL TQGFFQNLAI DFSCQPSRLG KSDITQQQVE GWFQSRRKEI 900 QAKGTTSSGA FDWVVESHED LSDLTMFSNE PDNSQKDPCI TDLSELAFEA KSSKDGAWYD 960 VASFLTYRVV SSGELEVRVR YAGFGREEDE WVNVRRAVRD RSIPLEESEC HKVKVGDLVL 1020 CFQEREDEAV YFDALVVEIQ RNLHDQTGCR CIFVVRFDHD KSKLPTSELR SRKKMASYMW 1080 RKYADYVYTK WERMILWNMV EPYTRPKSFT PLVTIYVAAF YTGVVASAIT EQLYKEKYWE 1140 DHPGHQVPLM KPKFYGGPWK TMTTYGTIPT EPLPSANVAI VSQAKEQIEL CLGIQRPWLE 1200 MIQLQNLRPP SSLNQSIERI RTNVAFFRMN YTIIILAILF ISLLWHPISL LLMIVLMAAW 1260 LSLYYLHDKP LMVLDHDIDH RFLMTALFLV TALVLFLTNV KYNIIRALSF GLAFVLVHGA 1320 LREPEDVFVV DDEEGSGGGS ETERNGNMYQ VKRYGGLGYG FPSLAVFRTP STPPSHIHAP 1380 LSFCQRKSIM SRSAQGWSWF RSKAKRFTPV SHQGSVWSGV KSPPVLYIIP SFKPTTCLVL 1440 ERVIQQIMWI TTCSNISIIL LASEGMKDQI PELDAQLATI FNSLNPYKAN LEDFDLIFLA 1500 YTTLEAKLTV VCFRGYAHYV GSPPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3s27_E | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s27_F | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s27_G | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s27_H | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_A | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_B | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_C | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_D | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_E | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_F | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_G | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s28_H | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_A | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_B | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_C | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_D | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_E | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_F | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_G | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
3s29_H | 0.0 | 14 | 796 | 16 | 808 | Sucrose synthase 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11429.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287544.1 | 0.0 | PREDICTED: sucrose synthase-like | ||||
Swissprot | P13708 | 0.0 | SUS_SOYBN; Sucrose synthase | ||||
TrEMBL | A0A2P6RK73 | 0.0 | A0A2P6RK73_ROSCH; Sucrose synthase | ||||
STRING | XP_004287544.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-52 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | mrna11429.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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