PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11429.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HB-other
Protein Properties Length: 1526aa    MW: 174486 Da    PI: 5.5344
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11429.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.62.8e-05839897652
                              S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS
                 Homeobox   6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 
                               ft++++  Le+ F++  ++ +++   + LA             ++t++qV  WFq rR
  mrna11429.1-v1.0-hybrid 839 VFTHSEIMKLENIFKEtpQQALTQGFFQNLAIDFscqpsrlgksDITQQQVEGWFQSRR 897
                              69*************978999************999**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008625.1E-25911545IPR000368Sucrose synthase
TIGRFAMsTIGR02470026792IPR012820Sucrose synthase, plant/cyanobacteria
CDDcd038001.22E-125270754No hitNo description
SuperFamilySSF537562.98E-50286754No hitNo description
Gene3DG3DSA:3.40.50.20003.1E-17549737No hitNo description
PfamPF005345.5E-31558730IPR001296Glycosyl transferase, family 1
Gene3DG3DSA:1.10.10.606.8E-4813898IPR009057Homeodomain-like
PROSITE profilePS500719.977831903IPR001356Homeobox domain
PfamPF167191.3E-389451063IPR032001SAWADEE domain
PfamPF032081.9E-3511951330IPR004895Prenylated rab acceptor PRA1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005985Biological Processsucrose metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0016157Molecular Functionsucrose synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1526 aa     Download sequence    Send to blast
MADPSSCAHC SIYERLDWTM SDHRVEILAV LSKLESNGKG FVQPQQLVAV FQAIPEAFGE  60
VSKNIQEALV LSPYLALAIR PRPGVWEHIR INMKTLDVEE LLVDEYLMMK EELVDGSAKG  120
DFVLELDFEP FNASVPKPIL SKSIGNGVEF LNRHISAKLF TEPESMQPEL LEFLRIHTHD  180
GKNLMLNDNI EDVESLQHVL MEVEEYLLTL SPETAYEAFE QKLQDLGLER GWGSNAGRVL  240
ETIQLLLELL EAPDACNLEK FLSKIPLVFN VVIMSPHGYF AQDNVLGYPD TGGQVVYILD  300
QVRALENEML KRIKEQGLDI TPRILIVTRL LPDAVGTTCG QRLEKVYGTQ YSDIIRVPFR  360
TEKGIVRRWI SRFEVWPYLE AYTEDVATEL LKEFQGKPDL IVGNYSDGNI VASLLAHKFD  420
VTQCTIAHAL EKTKYPDSDL YWKKLEDKYH FSCQFTADLI AMNQTDFIIT STFQEIAGNK  480
ETVGQYESHL AFTMPGLYRV VSGIDCFDPK FNIVSPGADM DIYFPYTEKE RRLTSFHSEI  540
EELLYNQVEN KEHLCVLNDK NKPIIFTMAR LDRVKNITGL VEWYGKNAKL RELVNLVVVA  600
GDRRKESKDN EEKAEMKKMY ELIDTYKLNG QFRWISSQMN RVRNGELYRY IADTKGAFVQ  660
PAVYEAFGLT VVEAMTCGLP TFATCKGGPA EIIVNGKSGY HIDPYNGDKA ADILVDFFEK  720
CKADPSHWDK ISQGGLKRIE EKYTWQIYSE RLLTLTGVYG FWKQVSDLDE KRRYIEMLYA  780
LRYKKSVESV PLAEEDFRIE IGVSLTLSLS PVMKDSNLVY NRRQSETKEE RKPMDSLSVF  840
THSEIMKLEN IFKETPQQAL TQGFFQNLAI DFSCQPSRLG KSDITQQQVE GWFQSRRKEI  900
QAKGTTSSGA FDWVVESHED LSDLTMFSNE PDNSQKDPCI TDLSELAFEA KSSKDGAWYD  960
VASFLTYRVV SSGELEVRVR YAGFGREEDE WVNVRRAVRD RSIPLEESEC HKVKVGDLVL  1020
CFQEREDEAV YFDALVVEIQ RNLHDQTGCR CIFVVRFDHD KSKLPTSELR SRKKMASYMW  1080
RKYADYVYTK WERMILWNMV EPYTRPKSFT PLVTIYVAAF YTGVVASAIT EQLYKEKYWE  1140
DHPGHQVPLM KPKFYGGPWK TMTTYGTIPT EPLPSANVAI VSQAKEQIEL CLGIQRPWLE  1200
MIQLQNLRPP SSLNQSIERI RTNVAFFRMN YTIIILAILF ISLLWHPISL LLMIVLMAAW  1260
LSLYYLHDKP LMVLDHDIDH RFLMTALFLV TALVLFLTNV KYNIIRALSF GLAFVLVHGA  1320
LREPEDVFVV DDEEGSGGGS ETERNGNMYQ VKRYGGLGYG FPSLAVFRTP STPPSHIHAP  1380
LSFCQRKSIM SRSAQGWSWF RSKAKRFTPV SHQGSVWSGV KSPPVLYIIP SFKPTTCLVL  1440
ERVIQQIMWI TTCSNISIIL LASEGMKDQI PELDAQLATI FNSLNPYKAN LEDFDLIFLA  1500
YTTLEAKLTV VCFRGYAHYV GSPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3s27_E0.01479616808Sucrose synthase 1
3s27_F0.01479616808Sucrose synthase 1
3s27_G0.01479616808Sucrose synthase 1
3s27_H0.01479616808Sucrose synthase 1
3s28_A0.01479616808Sucrose synthase 1
3s28_B0.01479616808Sucrose synthase 1
3s28_C0.01479616808Sucrose synthase 1
3s28_D0.01479616808Sucrose synthase 1
3s28_E0.01479616808Sucrose synthase 1
3s28_F0.01479616808Sucrose synthase 1
3s28_G0.01479616808Sucrose synthase 1
3s28_H0.01479616808Sucrose synthase 1
3s29_A0.01479616808Sucrose synthase 1
3s29_B0.01479616808Sucrose synthase 1
3s29_C0.01479616808Sucrose synthase 1
3s29_D0.01479616808Sucrose synthase 1
3s29_E0.01479616808Sucrose synthase 1
3s29_F0.01479616808Sucrose synthase 1
3s29_G0.01479616808Sucrose synthase 1
3s29_H0.01479616808Sucrose synthase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11429.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287544.10.0PREDICTED: sucrose synthase-like
SwissprotP137080.0SUS_SOYBN; Sucrose synthase
TrEMBLA0A2P6RK730.0A0A2P6RK73_ROSCH; Sucrose synthase
STRINGXP_004287544.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-52sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Zhang XQ, et al.
    Soybean nodule sucrose synthase (nodulin-100): further analysis of its phosphorylation using recombinant and authentic root-nodule enzymes.
    Arch. Biochem. Biophys., 1999. 371(1): p. 70-82
    [PMID:10525291]
  2. Komina O,Zhou Y,Sarath G,Chollet R
    In vivo and in vitro phosphorylation of membrane and soluble forms of soybean nodule sucrose synthase.
    Plant Physiol., 2002. 129(4): p. 1664-73
    [PMID:12177479]
  3. Xue ZT,Larsen K,Jochimsen BU
    Oxygen regulation of uricase and sucrose synthase synthesis in soybean callus tissue is exerted at the mRNA level.
    Plant Mol. Biol., 1991. 16(5): p. 899-906
    [PMID:1830495]
  4. Thummler F,Verma DP
    Nodulin-100 of soybean is the subunit of sucrose synthase regulated by the availability of free heme in nodules.
    J. Biol. Chem., 1987. 262(30): p. 14730-6
    [PMID:2889731]
  5. Zhang XQ,Chollet R
    Seryl-phosphorylation of soybean nodule sucrose synthase (nodulin-100) by a Ca2+-dependent protein kinase.
    FEBS Lett., 1997. 410(2-3): p. 126-30
    [PMID:9237614]