PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11428.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HRT-like

Protein Properties

Length: 154aa MW: 17389.9 Da PI: 9.9835

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11428.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	38.2	2.4e-12	39	57	13	31
HRT-like 13 krqPvkgRKRCeeHKGmRi 31 ++Pv+gRKRC+eHKGmRi mrna11428.1-v1.0-hybrid 39 ATPPVQGRKRCAEHKGMRI 57 689***************7 PP
2	HRT-like	52.4	8.6e-17	108	136	3	31
HRT-like 3 GviledGsvCkrqPvkgRKRCeeHKGmRi 31 G+il dGs C+++P++gRKRC eHKG+Ri mrna11428.1-v1.0-hybrid 108 GFILPDGSRCRTEPIQGRKRCDEHKGRRI 136 99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MVQGTLMMSF RDSRKFPQNL RDLLILSRGF YLSDRSKLAT PPVQGRKRCA EHKGMRIKAS 60 ITVRISDNNV DSKCSVLSNK ELDSHDASNV KFETVEFHVS ESSTLIFGFI LPDGSRCRTE 120 PIQGRKRCDE HKGRRIQKSN SKSVKEEEVD ICA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11428.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024181853.1	4e-57	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
Refseq	XP_024181854.1	2e-57	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2
TrEMBL	A0A2P6RK91	5e-56	A0A2P6RK91_ROSCH; Putative transcription factor HRT family
STRING	XP_004288924.1	3e-33	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF33979	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-14	effector of transcription2

Link Out ? help Back to Top
Phytozome	mrna11428.1-v1.0-hybrid