PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11419.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 350aa    MW: 38134.4 Da    PI: 9.9156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11419.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13122166347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  mrna11419.1-v1.0-hybrid 122 PWTEEEHRTFLMGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 166
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.321115171IPR017930Myb domain
SuperFamilySSF466892.54E-17117171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-18118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-11119165IPR009057Homeodomain-like
SMARTSM007171.0E-10119169IPR001005SANT/Myb domain
PfamPF002492.1E-11122166IPR001005SANT/Myb domain
CDDcd001672.61E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTN FRGSSAAGFV GTTPPHGFRL FGVQVHHHDQ VSSSVSSFNA  60
MNMMMKKSFS MDCLPTSSAS SSSPSSSRIS IDNEHSDHHK APIGYLSDGL ICRAQDRKKG  120
VPWTEEEHRT FLMGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ATLTKKKRRS  180
SLFDMFGGNN SDPQSKPSST IDPAQCVNSN IPSSPQRQSN IIQLQLSTTN TSASQNLKLS  240
DHHQQKPADY SSSTPPLGSS HDRDRVRDRT MPGWIYGLID SQLKYSNAVF SSSEPSNIPL  300
PPSSSVVPDH LELTLASPVR PLDLDQNRLS SSSSPTSGPL HNTGPISVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11419.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287537.10.0PREDICTED: protein REVEILLE 5-like
TrEMBLA0A2P6RK610.0A0A2P6RK61_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004287537.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-58MYB_related family protein