PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11356.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 279aa    MW: 30957.7 Da    PI: 8.477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11356.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.9e-151462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W+ eEd  l ++ +++G+  +W t + + g++R++k+c++rw++yl
  mrna11356.1-v1.0-hybrid 14 RGPWSLEEDATLRNYLNEHGTAgNWITLPTKAGLNRCGKSCRLRWLNYL 62
                             89******************99*************************97 PP
2Myb_DNA-binding41.92.4e-1368119146
                              TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 
                              rg++T+eEd  +  +++  G++        W+ Ia++++ gRt++++k++w++
  mrna11356.1-v1.0-hybrid  68 RGSFTEEEDNVICTLFRSIGSRqlissipKWSVIASKLP-GRTDNDVKNHWNT 119
                              89*************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.962962IPR017930Myb domain
SuperFamilySSF466891.51E-2312117IPR009057Homeodomain-like
SMARTSM007173.2E-101364IPR001005SANT/Myb domain
PfamPF002492.8E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-231569IPR009057Homeodomain-like
CDDcd001672.59E-71662No hitNo description
PROSITE profilePS5129419.52963125IPR017930Myb domain
SMARTSM007173.6E-1167123IPR001005SANT/Myb domain
PfamPF002492.0E-1168119IPR001005SANT/Myb domain
CDDcd001672.29E-870121No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2270125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSLE EDATLRNYLN EHGTAGNWIT LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGS FTEEEDNVIC TLFRSIGSRQ LISSIPKWSV IASKLPGRTD NDVKNHWNTK  120
LKKKLLAVAA RKNIFSTRKN NIAQFSSPVP PKIETPQGAE TASSCLSGTL PYAANTSFVH  180
SFDQAKQTLE PWCSYFSGSK PMEVSDFGST SESNSFSIPQ SHQEVSSLPS SSSLAQLDQN  240
HYSLWSGFED FNINSDFLVN FEFETPPGDH FLPGGFGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141257108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11356.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288907.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A2P6RJZ61e-146A0A2P6RJZ6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004288907.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-58MYB family protein