PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11354.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 401aa    MW: 44226.6 Da    PI: 6.5731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11354.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08142162526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C++f++ G+Ck Gd+C FaHg
  mrna11354.1-v1.0-hybrid 142 ACPDFRK-GHCKKGDSCEFAHG 162
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.29689126IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6137163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089138164IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-6142162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5142164IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615172196IPR000571Zinc finger, CCCH-type
SMARTSM0035613172195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMLGEPHRPN PTIHVPPWLN LDDPTAEIYS SPYPLSGVSV TSDVTSPNSP YHLNEALATL  60
RRYLPSNEVS DPDPDPYPDS EFDLDNDSPV DAYSCDHFRM FEFKVRRCAR GRSHDWTDCP  120
FAHPGEKARR RDPRKFHYSG TACPDFRKGH CKKGDSCEFA HGVFECWLHP ARYRTQPCKD  180
GTSCKRRVCF FAHTPEQLRV LPQQSPRGSN SVTSSMESYD GSPMRQAMEL AKGMPFLSAS  240
PEISPENSPP MSPMTRSVSR SLGSSSVSEM VASLRNLQLG KVKSLPTSWN VQVGSVGSVG  300
SPGFVSPRGS MLRPGFCSLP STPTRIPTRS TVGGFLDFCD EGCEEEVPME RVESGRDLRA  360
KMFERLREEN SLGRVDPTLA LGGSSGAPDV GWVSELVNCE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11354.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459526.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-135C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P6RJZ30.0A0A2P6RJZ3_ROSCH; Putative transcription factor C3H family
STRINGXP_004287502.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]