PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11344.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 500aa    MW: 56331.4 Da    PI: 7.1423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11344.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.31.3e-35431871128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                              lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+
  mrna11344.1-v1.0-hybrid  43 LPAGVKFDPTDQELI-EHLEAKVEAKDtkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKR 123
                              799************.99*******996665443...133333666646**********.555666799***************** PP

                      NAM  76 ra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              r+            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  mrna11344.1-v1.0-hybrid 124 RKiqtecdhlqaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 187
                              *8566666665433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3839206IPR003441NAC domain
PROSITE profilePS5100533.0143206IPR003441NAC domain
PfamPF023653.6E-1644187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MNKSNIRSSD LIDAKLEEHQ MCGSKQCPGC GHKLEGKPDW LGLPAGVKFD PTDQELIEHL  60
EAKVEAKDTK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT  120
RKRRKIQTEC DHLQAGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW  180
VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSSERSS AASASLTGEG SSDLRRDSGG  240
SGSCTSSKEI IVSHNTHLRD HHDQMSAAAA AQVNVVGQPL TSYNAIDIHQ LKSDHFSFVP  300
FRKSFDEVGI GEASTAREPS IASGTCEDLR ERPQLHHVAH DQLLHHHQHQ QQVHHEQQQH  360
QHGQTHLQQQ IATAASFHIS RPSHPISTII SPPSLHHSAT SIMLDQDAYH VSRSIMLQNE  420
HFQQQQQQQQ QQQQQQQQQQ QHHKQMGGRS ASGLEELIMA CTSSSNVKEE SSSMANPQEA  480
EWMKYSPFWP DPDNTDHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-134118713140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11344.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459487.10.0PREDICTED: myb-like protein Q isoform X3
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2P6RJY30.0A0A2P6RJY3_ROSCH; Putative transcription factor NAM family
STRINGXP_004287496.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-141NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]