PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11268.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16530.1 Da    PI: 10.2465
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11268.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii++s+gk+ +y+s
  mrna11268.1-v1.0-hybrid  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIIASSGKMVDYCS 59
                             79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-32290IPR002100Transcription factor, MADS-box
CDDcd002659.37E-37281No hitNo description
PRINTSPR004044.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIIAS SGKMVDYCSG  60
PPETLKKILD KYHSQSGKRL WDAKHEDRAL EEERKRLTYQ LYKVMKIEEN LRDMNYNTTT  120
HGQQIPFALR VQPNQPNLHD IM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-17176173MEF2 CHIMERA
6byy_B8e-17176173MEF2 CHIMERA
6byy_C8e-17176173MEF2 CHIMERA
6byy_D8e-17176173MEF2 CHIMERA
6bz1_A8e-17176173MEF2 CHIMERA
6bz1_B8e-17176173MEF2 CHIMERA
6bz1_C8e-17176173MEF2 CHIMERA
6bz1_D8e-17176173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11268.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0384621e-120AB038462.1 Rosa rugosa MASAKO BP mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290916.18e-57PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ0HA252e-45MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0B0P6C11e-53A0A0B0P6C1_GOSAR; Floral homeotic PMADS 2
STRINGXP_004290916.13e-56(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]