PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11244.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 508aa    MW: 58169.4 Da    PI: 5.852
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11244.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-111050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +ien s+r+ t+ kR++g   K +E+ +LCd+++a +i+s+
  mrna11244.1-v1.0-hybrid 10 FIENMSQRKSTYRKRKKGFTTKMNEIGILCDVKAAAVIYSP 50
                             8**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.498149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16183IPR002100Transcription factor, MADS-box
CDDcd002667.83E-18284No hitNo description
PRINTSPR004043.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-121050IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MARRKVRLQF IENMSQRKST YRKRKKGFTT KMNEIGILCD VKAAAVIYSP FETEPVVIPD  60
HETAVQLFTE WRDMPEMERT KRMVTQEMFL RQRIQKTRDQ IRKIKRDNKE KELTNTMYGV  120
LHDWKLDPIY KLDLKDVNEL KSTIERYIHQ TRMIKQNATV QESHENRQNQ TVDQPTAMEL  180
GLTTWTPFGE GTSRSMEQQT QQQQQSQVAA EPATMELGLT TWTPFGEGTN RAFEQQTQQQ  240
QQYQEVAEPA SMELSLTRRT PFGEGNSRNM EQQTQQQQYQ AAVEAQSMEE TQHQLMQFLA  300
HREQQQQQMM FQQQQQMMIF QQQNPIAAQW QQQQQQQQMM YQQSTWFSNI LNPQTPPQTM  360
DFLNPLAPLQ PGAFGDYVSS GSATQLYAPL PPGTLGDHNN NGNATWPDDS SFRFPSLSEA  420
EAEAESALFH GKLGTAITKT LLAALCFVPV PTCVPFAALD AVSELGVSPV AGARWVHETL  480
GGGASLDYVF RNPVHSIFFY VPDSSCW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLQFIENMSQRKSTYRKRK
22125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11244.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458809.10.0PREDICTED: agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3386122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.13e-30AGAMOUS-like 38