PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11233.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 315aa MW: 36345.2 Da PI: 6.7969

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11233.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.5	1.9e-19	13	54	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +++ r +tf kR++gilKKA+E S+LC+++ ++ii+++++ mrna11233.1-v1.0-hybrid 13 IADERSRRITFQKRKKGILKKAYEFSTLCGVDMCLIIYGPKQ 54 789999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-15	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.787	3	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.70E-24	4	84	No hit	No description
PRINTS	PR00404	1.5E-10	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-19	5	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-18	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-10	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-10	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGRGGGKLNM QLIADERSRR ITFQKRKKGI LKKAYEFSTL CGVDMCLIIY GPKQSDRRPA 60 ELHTWPQNPD EVNRIIEKFK LNNKPATKTY NLSDWLHEQK GKMDAKVSKL KSDMYEAKYP 120 TWDDRINEFS EEQLEELVNV LDQKIEYGKR TLNNVRAPRT LQLGGNDVGD VTSQKLSNHM 180 HNYAHYLGEY EDHKPSYVGM MDMQMPFSID QPTNYSQIFQ YDSDLNSMMA NPLMGYPRTY 240 YDPSEENQMV QSPAEKMMMF NSVPGSSMSH YAQLIHKPMS YTQYPMNISS ISSQLGTPQV 300 KDCEDDNLVH DKMV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	27	RSRRITFQKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11233.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011458807.1	0.0	PREDICTED: agamous-like MADS-box protein AGL19
Refseq	XP_011458808.1	0.0	PREDICTED: agamous-like MADS-box protein AGL19
TrEMBL	A0A2P6PXE4	0.0	A0A2P6PXE4_ROSCH; Putative transcription factor MADS-type1 family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	7e-23	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	mrna11233.1-v1.0-hybrid