PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11226.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 32803.3 Da PI: 8.1744 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.3e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv++yL++k+ ++++++ +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkat mrna11226.1-v1.0-hybrid 7 LPPGFRFHPTDEELVKHYLCRKCLSQPISV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKAT 91 79****************************.88***************6555679******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++ + vg+kk Lvfy g+ap+gekt+W+mheyrl mrna11226.1-v1.0-hybrid 92 GADKPIGL--PKPVGIKKALVFYAGKAPRGEKTNWIMHEYRL 131 ******99..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.719 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSSELQLPPG FRFHPTDEEL VKHYLCRKCL SQPISVPIIA EIDLYKYDPW ELPGLALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGLP KPVGIKKALV FYAGKAPRGE 120 KTNWIMHEYR LADVDRTPRK KNSLRLDDWV LCRIYNKKGT AGKVQPPMSQ QAISGGSEFE 180 DVKPKNLMAC ALPPPAAVAP TRPSEYVYLE NSDSVPRLHT DSSCSEHVVS PEFTSEVQSE 240 PKWKEWERAL DFPYNYEDAT MGNGFGAQFQ GGNQMSPLQD IFMFLQKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-79 | 2 | 158 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11226.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290890.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-151 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A346T534 | 0.0 | A0A346T534_ROSHC; ATAF1 protein | ||||
STRING | XP_004290890.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-144 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11226.1-v1.0-hybrid |